日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

SARS-CoV-2 wastewater genomic surveillance: approaches, challenges, and opportunities

SARS-CoV-2废水基因组监测:方法、挑战和机遇

Munteanu, Viorel; Saldana, Michael A; Dreifuss, David; Ouyang, Wenhao O; Ferdous, Jannatul; Mohebbi, Fatemeh; Roseberry, Jessica Schlueter; Ciorba, Dumitru; Bostan, Viorel; Gordeev, Victor; Drabcinski, Nicolae; Su, Justin Maine; Kasianchuk, Nadiia; Sharma, Nitesh Kumar; Knyazev, Sergey; Aßmann, Eva; Lobiuc, Andrei; Covasa, Mihai; Crandall, Keith A; Wu, Nicholas C; Mason, Christopher E; Tierney, Braden T; Lucaci, Alexander G; Ophoff, Roel A; Gibas, Cynthia; Rzymski, Piotr; Skums, Pavel; Solo-Gabriele, Helena; Niko, Beerenwinkel; Zelikovsky, Alex; Hölzer, Martin; Smith, Adam; Mangul, Serghei

Assessment of PHRED Score Characteristics in Illumina MiSeq Amplicon Sequencing

Illumina MiSeq扩增子测序中PHRED评分特征的评估

Sims, Seth; Khudyakov, Yury; Zelikovsky, Alexander

Analysis of metagenomic data

宏基因组数据分析

Liu, Shaopeng; Rodriguez, Judith S; Munteanu, Viorel; Ronkowski, Cynthia; Sharma, Nitesh Kumar; Alser, Mohammed; Andreace, Francesco; Blekhman, Ran; Błaszczyk, Dagmara; Chikhi, Rayan; Crandall, Keith A; Della Libera, Katja; Francis, Dallace; Frolova, Alina; Gancz, Abigail Shahar; Huntley, Naomi E; Jaiswal, Pooja; Kosciolek, Tomasz; Łabaj, Pawel P; Łabaj, Wojciech; Luan, Tu; Mason, Christopher; Moustafa, Ahmed M; Muralidharan, Harihara Subrahmaniam; Mutlu, Onur; Mansouri Ghiasi, Nika; Rahnavard, Ali; Sun, Fengzhu; Tian, Shuchang; Tierney, Braden T; Van Syoc, Emily; Vicedomini, Riccardo; Zackular, Joseph P; Zelikovsky, Alex; Zielińska, Kinga; Ganda, Erika; Davenport, Emily R; Pop, Mihai; Koslicki, David; Mangul, Serghei

Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella-Infected and Uninfected Mice

评估伯氏疏螺旋体感染小鼠和未感染小鼠体内酶表达和代谢途径活性

Rondel, Filipp Martin; Farooq, Hafsa; Hosseini, Roya; Juyal, Akshay; Knyazev, Sergey; Mangul, Serghei; Rogovskyy, Artem S; Zelikovsky, Alexander

Leveraging wastewater sequencing to strengthen global public health surveillance

利用废水测序加强全球公共卫生监测

Gordeev, Victor; Hölzer, Martin; Desirò, Daniel; Goraichuk, Iryna V; Knyazev, Sergey; Solo-Gabriele, Helena; Skums, Pavel; Karthikeyan, Smruthi; Evans, Alexandria; Agrawal, Shelesh; Lucaci, Alexander G; Mason, Christopher E; Su, Justin M; Gibas, Cynthia; Nagarajan, Niranjan; Peres da Silva, Rafael; Drabcinski, Nicolae; Munteanu, Viorel; Zhan, Lingyu; Rubin, Julia; Wu, Nicholas C; Trister, Andrew; Ciorba, Dumitru; Bostan, Viorel; Lobiuc, Andrei; Covasa, Mihai; Ophoff, Roel A; Zelikovsky, Alex; Dimian, Mihai; Mangul, Serghei

Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks

通过分析协同替换网络的社群结构,早期发现新出现的病毒变异株

Mohebbi, Fatemeh; Zelikovsky, Alex; Mangul, Serghei; Chowell, Gerardo; Skums, Pavel

A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data

对基于比对的HLA分型算法在RNA-seq数据中的严格基准测试

Yu, Dottie; Ayyala, Ram; Sadek, Sarah Hany; Chittampalli, Likhitha; Farooq, Hafsa; Jung, Junghyun; Nahid, Abdullah Al; Boldirev, Grigore; Jung, Mina; Park, Sungmin; Nguyen, Austin; Zelikovsky, Alex; Mancuso, Nicholas; Joo, Jong Wha J; Thompson, Reid F; Alachkar, Houda; Mangul, Serghei

Comparative transcriptome analysis of Peromyscus leucopus and C3H mice infected with the Lyme disease pathogen

对感染莱姆病病原体的白足鼠和C3H小鼠进行比较转录组分析

Gaber, Alhussien M; Mandric, Igor; Nitirahardjo, Caroline; Piontkivska, Helen; Hillhouse, Andrew E; Threadgill, David W; Zelikovsky, Alex; Rogovskyy, Artem S

Benchmarking machine learning robustness in Covid-19 genome sequence classification

评估机器学习在新冠病毒基因组序列分类中的鲁棒性

Ali, Sarwan; Sahoo, Bikram; Zelikovsky, Alexander; Chen, Pin-Yu; Patterson, Murray

Reconstruction of Viral Variants via Monte Carlo Clustering

利用蒙特卡罗聚类法重建病毒变异株

Juyal, Akshay; Hosseini, Roya; Novikov, Daniel; Grinshpon, Mark; Zelikovsky, Alex