日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

An integrated view of the structure and function of the human 4D nucleome

人类4D核组结构和功能的综合视图

Dekker, Job; Oksuz, Betul Akgol; Zhang, Yang; Wang, Ye; Minsk, Miriam K; Kuang, Shuzhen; Yang, Liyan; Gibcus, Johan H; Krietenstein, Nils; Rando, Oliver J; Xu, Jie; Janssens, Derek H; Henikoff, Steven; Kukalev, Alexander; Andréa, Willemin; Winick-Ng, Warren; Kempfer, Rieke; Pombo, Ana; Yu, Miao; Kumar, Pradeep; Zhang, Liguo; Belmont, Andrew S; Sasaki, Takayo; van Schaik, Tom; Brueckner, Laura; Peric-Hupkes, Daan; van Steensel, Bas; Wang, Ping; Chai, Haoxi; Kim, Minji; Ruan, Yijun; Zhang, Ran; Quinodoz, Sofia A; Bhat, Prashant; Guttman, Mitchell; Zhao, Wenxin; Chien, Shu; Liu, Yuan; Venev, Sergey V; Plewczynski, Dariusz; Azcarate, Ibai Irastorza; Szabó, Dominik; Thieme, Christoph J; Szczepińska, Teresa; Chiliński, Mateusz; Sengupta, Kaustav; Conte, Mattia; Esposito, Andrea; Abraham, Alex; Zhang, Ruochi; Wang, Yuchuan; Wen, Xingzhao; Wu, Qiuyang; Yang, Yang; Liu, Jie; Boninsegna, Lorenzo; Yildirim, Asli; Zhan, Yuxiang; Chiariello, Andrea Maria; Bianco, Simona; Lee, Lindsay; Hu, Ming; Li, Yun; Barnett, R Jordan; Cook, Ashley L; Emerson, Daniel J; Marchal, Claire; Zhao, Peiyao; Park, Peter J; Alver, Burak H; Schroeder, Andrew J; Navelkar, Rahi; Bakker, Clara; Ronchetti, William; Ehmsen, Shannon; Veit, Alexander D; Gehlenborg, Nils; Wang, Ting; Li, Daofeng; Wang, Xiaotao; Nicodemi, Mario; Ren, Bing; Zhong, Sheng; Phillips-Cremins, Jennifer E; Gilbert, David M; Pollard, Katherine S; Alber, Frank; Ma, Jian; Noble, William S; Yue, Feng

Epigenetic memory of colitis promotes tumour growth.

结肠炎的表观遗传记忆促进肿瘤生长。

Nagaraja Surya, Ojeda-Miron Lety, Zhang Ruochi, Oreskovic Ena, Hock Conrad, Hu Yan, Zeve Daniel, Sharma Karina, Hyman Roni R, Zhang Qiming, Castillo Andrew, Breault David T, Yilmaz Ömer H, Buenrostro Jason D

AMPCliff: Quantitative definition and benchmarking of activity cliffs in antimicrobial peptides

AMPCliff:抗菌肽活性悬崖的定量定义和基准测试

Li, Kewei; Wu, Yuqian; Li, Yinheng; Guo, Yutong; Kong, Yanwen; Wang, Yan; Liang, Yiyang; Fan, Yusi; Huang, Lan; Zhang, Ruochi; Zhou, Fengfeng

Constrained Diffusion as a Paradigm for Evolution

受限扩散作为演化的范式

Lazarev, Daniel; Sappington, Anna; Chau, Grant; Zhang, Ruochi; Berger, Bonnie

Unified molecular approach for spatial epigenome, transcriptome, and cell lineages.

空间表观基因组、转录组和细胞谱系的统一分子方法

Huang Yung-Hsin, Belk Julia A, Zhang Ruochi, Weiser Natasha E, Chiang Zachary, Jones Matthew G, Mischel Paul S, Buenrostro Jason D, Chang Howard Y

PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids

PepLand:一个大规模预训练肽段表征模型,用于全面展现典型和非典型氨基酸的组成。

Zhang, Ruochi; Wu, Haoran; Liu, Chang; Yang, Qian; Xiu, Yuting; Li, Kewei; Chen, Ningning; Wang, Yu; Wang, Yan; Gao, Xin; Zhou, Fengfeng

Engineered histones reshape chromatin in human cells.

工程化组蛋白重塑人类细胞中的染色质。

Jena Siddhartha G, Nagaraja Surya, Earl Andrew S, Driller-Colangelo Amalia R, Quezada Michael A, Oreskovic Ena, Horlbeck Max A, Zhang Ruochi, Gomarga Wilson, Buenrostro Jason D

scGHOST: identifying single-cell 3D genome subcompartments

scGHOST:识别单细胞 3D 基因组亚区室

Xiong, Kyle; Zhang, Ruochi; Ma, Jian

MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning

MolFeSCue:利用少样本和对比学习增强数据有限和不平衡情况下的分子性质预测

Zhang, Ruochi; Wu, Chao; Yang, Qian; Liu, Chang; Wang, Yan; Li, Kewei; Huang, Lan; Zhou, Fengfeng

HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer

HELM-GPT:基于生成式预训练Transformer的从头大环肽设计

Xu, Xiaopeng; Xu, Chencheng; He, Wenjia; Wei, Lesong; Li, Haoyang; Zhou, Juexiao; Zhang, Ruochi; Wang, Yu; Xiong, Yuanpeng; Gao, Xin