日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

VACmap: an accurate long-read aligner for unraveling complex genomic rearrangements

VACmap:一种用于解析复杂基因组重排的精确长读比对工具

Ding, Hongyu; Sedlazeck, Fritz J; Proukakis, Christos; Morley, Caoimhe; Toffoli, Marco; Schapira, Anthony Hv; Liao, Zhirui; Pu, Lianrong; Zhu, Shanfeng

Vaner2: towards more general biomedical named entity recognition using multi-task large language model encoders

Vaner2:利用多任务大型语言模型编码器实现更通用的生物医学命名实体识别

Liu, Yuxuan; Bian, Junyi; Zhai, Weiqi; Zheng, Jiaxuan; Zhang, Yuyi; Zhu, Shanfeng

PhenoRareAI: Phenotype-based intelligent diagnosis for rare neuromuscular disorders of glycogen storage disease and spinal muscular atrophy

PhenoRareAI:基于表型的罕见神经肌肉疾病(糖原贮积症和脊髓性肌萎缩症)智能诊断

Zhai, Weiqi; Jiao, Kexin; Wang, Ningning; Yu, Liqiang; Huang, Xiaodi; Li, Wenhui; Hu, Chaoping; Chen, Xinyu; Zhu, Bochen; Zhang, Jialong; Chang, Xuechun; Zhong, Huahua; Zhao, Chongbo; Huang, Zhi; Yang, Guangyao; Zhu, Shanfeng; Zhu, Wenhua

Benchmarking metagenomic binning tools on real datasets across sequencing platforms and binning modes

在真实数据集上对跨测序平台和分箱模式的宏基因组分箱工具进行基准测试

Han, Haitao; Wang, Ziye; Zhu, Shanfeng

Serum cystatin C as a potential biomarker for generalized acetylcholine receptor antibody-positive myasthenia gravis.

血清胱抑素C作为全身性乙酰胆碱受体抗体阳性重症肌无力的潜在生物标志物

He Dingxian, Zhong Huahua, Jin Lei, Chen Ran, Wu Zongtai, Zhao Rui, Huan Xiao, Yan Chong, Song Jie, Xi Jianying, Zhao Chongbo, Zhu Shanfeng, Luo Sushan

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology

PLMSearch:蛋白质语言模型助力精准快速的序列搜索,用于远程同源性研究

Liu, Wei; Wang, Ziye; You, Ronghui; Xie, Chenghan; Wei, Hong; Xiong, Yi; Yang, Jianyi; Zhu, Shanfeng

Effective binning of metagenomic contigs using contrastive multi-view representation learning

利用对比多视图表示学习对宏基因组重叠群进行有效分箱

Wang, Ziye; You, Ronghui; Han, Haitao; Liu, Wei; Sun, Fengzhu; Zhu, Shanfeng

GORetriever: reranking protein-description-based GO candidates by literature-driven deep information retrieval for protein function annotation

GORetriever:基于文献驱动的深度信息检索,对基于蛋白质描述的GO候选条目进行重新排序,用于蛋白质功能注释

Yan, Huiying; Wang, Shaojun; Liu, Hancheng; Mamitsuka, Hiroshi; Zhu, Shanfeng

MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities

MetaBinner:一种高性能的独立集成分箱方法,用于从复杂的微生物群落中恢复单个基因组

Wang, Ziye; Huang, Pingqin; You, Ronghui; Sun, Fengzhu; Zhu, Shanfeng

Critical Assessment of Metagenome Interpretation: the second round of challenges

宏基因组解读的关键评估:第二轮挑战

Meyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J; Brown, C Titus; Buchmann, Jan; Buluç, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T L C; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jørgensen, Tue Sparholt; Kieser, Silas D; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C; Porter, Jacob S; Rasmussen, Simon; Rees, Evan R; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sørensen, Søren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Häußler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn