日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal

利用 dominoSignal 从单细胞数据中推断细胞间通讯的差异细胞信号传导测试

Mitchell, Jacob T; Stapleton, Orian; Krishnan, Kavita; Nagaraj, Sushma; Lvovs, Dmitrijs; Cherry, Christopher; Poissonnier, Amanda; Horton, Wesley; Adey, Andrew; Rao, Varun; Huff, Amanda; Zimmerman, Jacquelyn W; Kagohara, Luciane T; Zaidi, Neeha; Coussens, Lisa M; Jaffee, Elizabeth M; Elisseeff, Jennifer H; Fertig, Elana J

Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories

人类可理解的语法对多细胞系统生物学模型进行编码,以实现虚拟细胞实验室的普及化。

Johnson, Jeanette A I; Bergman, Daniel R; Rocha, Heber L; Zhou, David L; Cramer, Eric; Mclean, Ian C; Dance, Yoseph W; Booth, Max; Nicholas, Zachary; Lopez-Vidal, Tamara; Deshpande, Atul; Heiland, Randy; Bucher, Elmar; Shojaeian, Fatemeh; Dunworth, Matthew; Forjaz, André; Getz, Michael; Godet, Inês; Kurtoglu, Furkan; Lyman, Melissa; Metzcar, John; Mitchell, Jacob T; Raddatz, Andrew; Solorzano, Jacobo; Sundus, Aneequa; Wang, Yafei; DeNardo, David G; Ewald, Andrew J; Gilkes, Daniele M; Kagohara, Luciane T; Kiemen, Ashley L; Thompson, Elizabeth D; Wirtz, Denis; Wood, Laura D; Wu, Pei-Hsun; Zaidi, Neeha; Zheng, Lei; Zimmerman, Jacquelyn W; Phillip, Jude M; Jaffee, Elizabeth M; Gray, Joe W; Coussens, Lisa M; Chang, Young Hwan; Heiser, Laura M; Stein-O'Brien, Genevieve L; Fertig, Elana J; Macklin, Paul

Direct Inhibition of RAS Reveals the Features of Oncogenic Signaling Driven by RAS G12 and Q61 Mutations.

直接抑制 RAS 揭示了由 RAS G12 和 Q61 突变驱动的致癌信号的特征

Marasco Michelangelo, Kumar Dinesh, Garcia Borrego Santiago, Seale Tessa, Maddalena Giulia, Mezzadra Riccardo, Belanger Kylie, Cole Soren, Perez Brayan, Luan Wei, Mukherjee Radha, Aricescu Ilinca, Markov Vladimir, Zhu Yuxin, Arena Sabrina, Bardelli Alberto, de Stanchina Elisa, Lowe Scott W, Burkhart Richard A, Zimmerman Jacquelyn W, Yaeger Rona, Kopetz Scott E, Rosen Neal, Misale Sandra

Spatial proteomics and transcriptomics reveal early immune cell organization in pancreatic intraepithelial neoplasia.

空间蛋白质组学和转录组学揭示了胰腺上皮内瘤变早期免疫细胞的组织结构

Lyman Melissa R, Mitchell Jacob T, Raghavan Sidharth, Kagohara Luciane T, Huff Amanda L, Haldar Saurav D, Shin Sarah M, Guinn Samantha, Barrett Benjamin, Longway Gabriella, Hernandez Alexei, Coyne Erin M, Yuan Xuan, Andaloori Lalitya, Lai Jiaying, Liu Yun Zhou, Karchin Rachel, Gupta Anuj, Kiemen Ashley L, Forjaz André, Wirtz Denis, Wu Pei-Hsun, Deshpande Atul, Lee Jae W, Armstrong Todd D, Azad Nilofer S, Zimmerman Jacquelyn W, Wood Laura D, Anders Robert A, Thompson Elizabeth D, Jaffee Elizabeth M, Fertig Elana J, Ho Won Jin, Zaidi Neeha

Temporal reassignment and correspondence evaluation with quality control for time-course imaging of 3D cell culture.

3D细胞培养时间序列成像的时间重分配和对应性评估与质量控制。

Cramer Eric M, Lopez-Vidal Tamara, Johnson Jeanette, Wang Vania, Bergman Daniel R, Weeraratna Ashani, Burkhart Richard, Fertig Elana J, Zimmerman Jacquelyn W, Heiser Laura M, Chang Young Hwan

Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal

利用 dominoSignal 从单细胞数据中推断细胞间通讯的差异细胞信号传导测试

Mitchell, Jacob T; Stapleton, Orian; Krishnan, Kavita; Nagaraj, Sushma; Lvovs, Dmitrijs; Cherry, Christopher; Poissonnier, Amanda; Horton, Wes; Adey, Andrew; Rao, Varun; Huff, Amanda; Zimmerman, Jacquelyn W; Kagohara, Luciane T; Zaidi, Neeha; Coussens, Lisa M; Jaffee, Elizabeth M; Elisseeff, Jeniffer H; Fertig, Elana J

Automated Quality Control of Time-Course Imaging from 3D in vitro cultures

三维体外培养时间序列成像的自动化质量控制

Cramer, Eric; Lopez-Vidal, Tamara; Johnson, Jeanette; Wang, Vania; Bergman, Daniel; Weeraratna, Ashani; Burkhart, Richard; Fertig, Elana J; Zimmerman, Jacquelyn W; Heiser, Laura M; Chang, Young Hwan

Patient-derived Organoid Pharmacotyping As A Predictive Tool for Therapeutic Selection in Pancreatic Ductal Adenocarcinoma

患者来源的类器官药理分型作为胰腺导管腺癌治疗选择的预测工具

Nicolson, Norman G; Tandurella, Joseph A; Wu, Lawrence W; Patel, Jignasha; Morris, Eli; Seppälä, Toni T; Guinn, Samantha; Zlomke, Haley; Shubert, Christopher R; Lafaro, Kelly J; Burns, William R; Cameron, John L; He, Jin; Fertig, Elana J; Jaffee, Elizabeth M; Zimmerman, Jacquelyn W; Burkhart, Richard A

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

利用CoGAPS的Python、R和GenePattern Notebook实现,通过非负矩阵分解推断单细胞数据中的细胞和分子过程。

Johnson, Jeanette A I; Tsang, Ashley P; Mitchell, Jacob T; Zhou, David L; Bowden, Julia; Davis-Marcisak, Emily; Sherman, Thomas; Liefeld, Ted; Loth, Melanie; Goff, Loyal A; Zimmerman, Jacquelyn W; Kinny-Köster, Ben; Jaffee, Elizabeth M; Tamayo, Pablo; Mesirov, Jill P; Reich, Michael; Fertig, Elana J; Stein-O'Brien, Genevieve L

Cancer-cell-derived sialylated IgG as a novel biomarker for predicting poor pathological response to neoadjuvant therapy and prognosis in pancreatic cancer

癌细胞来源的唾液酸化IgG作为一种新型生物标志物,可用于预测胰腺癌新辅助治疗的不良病理反应和预后

Cui, Ming; Shoucair, Sami; Liao, Quan; Qiu, Xiaoyan; Kinny-Köster, Benedict; Habib, Joseph R; Ghabi, Elie M; Wang, Junke; Shin, Eun Ji; Leng, Sean X; Ali, Syed Z; Thompson, Elizabeth D; Zimmerman, Jacquelyn W; Shubert, Christopher R; Lafaro, Kelly J; Burkhart, Richard A; Burns, William R; Zheng, Lei; He, Jin; Zhao, Yupei; Wolfgang, Christopher L; Yu, Jun