日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Multimodal single cell analyses reveal gene networks of planarian stem cell differentiation

多模态单细胞分析揭示涡虫干细胞分化的基因网络

Pérez-Posada, Alberto; García-Castro, Helena; Emili, Elena; Guixeras-Fontana, Anna; Vanni, Virginia; Salamanca-Diaz, David; Arias-Baldrich, Cirenia; Frölich, Siebren; van Heeringen, Simon J; Cebrià, Francesc; Kenny, Nathan; Solana, Jordi

Computational approaches to understand transcription regulation in development

利用计算方法理解发育过程中的转录调控

van der Sande, Maarten; Frölich, Siebren; van Heeringen, Simon J

Seq2science: an end-to-end workflow for functional genomics analysis

Seq2science:用于功能基因组学分析的端到端工作流程

van der Sande, Maarten; Frölich, Siebren; Schäfers, Tilman; Smits, Jos G A; Snabel, Rebecca R; Rinzema, Sybren; van Heeringen, Simon J

scANANSE gene regulatory network and motif analysis of single-cell clusters

scanANANSE基因调控网络和单细胞簇的基序分析

Smits, Jos G A; Arts, Julian A; Frölich, Siebren; Snabel, Rebecca R; Heuts, Branco M H; Martens, Joost H A; van Heeringen, Simon J; Zhou, Huiqing

ANANSE: an enhancer network-based computational approach for predicting key transcription factors in cell fate determination

ANANSE:一种基于增强子网络的计算方法,用于预测细胞命运决定中的关键转录因子

Xu, Quan; Georgiou, Georgios; Frölich, Siebren; van der Sande, Maarten; Veenstra, Gert Jan C; Zhou, Huiqing; van Heeringen, Simon J

Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis

利用贝叶斯线性混合模型研究条件间依赖性对基序活性分析的影响

Lederer, Simone; Heskes, Tom; van Heeringen, Simon J; Albers, Cornelis A

Genome evolution in the allotetraploid frog Xenopus laevis

异源四倍体非洲爪蟾的基因组进化

Session, Adam M; Uno, Yoshinobu; Kwon, Taejoon; Chapman, Jarrod A; Toyoda, Atsushi; Takahashi, Shuji; Fukui, Akimasa; Hikosaka, Akira; Suzuki, Atsushi; Kondo, Mariko; van Heeringen, Simon J; Quigley, Ian; Heinz, Sven; Ogino, Hajime; Ochi, Haruki; Hellsten, Uffe; Lyons, Jessica B; Simakov, Oleg; Putnam, Nicholas; Stites, Jonathan; Kuroki, Yoko; Tanaka, Toshiaki; Michiue, Tatsuo; Watanabe, Minoru; Bogdanovic, Ozren; Lister, Ryan; Georgiou, Georgios; Paranjpe, Sarita S; van Kruijsbergen, Ila; Shu, Shengquiang; Carlson, Joseph; Kinoshita, Tsutomu; Ohta, Yuko; Mawaribuchi, Shuuji; Jenkins, Jerry; Grimwood, Jane; Schmutz, Jeremy; Mitros, Therese; Mozaffari, Sahar V; Suzuki, Yutaka; Haramoto, Yoshikazu; Yamamoto, Takamasa S; Takagi, Chiyo; Heald, Rebecca; Miller, Kelly; Haudenschild, Christian; Kitzman, Jacob; Nakayama, Takuya; Izutsu, Yumi; Robert, Jacques; Fortriede, Joshua; Burns, Kevin; Lotay, Vaneet; Karimi, Kamran; Yasuoka, Yuuri; Dichmann, Darwin S; Flajnik, Martin F; Houston, Douglas W; Shendure, Jay; DuPasquier, Louis; Vize, Peter D; Zorn, Aaron M; Ito, Michihiko; Marcotte, Edward M; Wallingford, John B; Ito, Yuzuru; Asashima, Makoto; Ueno, Naoto; Matsuda, Yoichi; Veenstra, Gert Jan C; Fujiyama, Asao; Harland, Richard M; Taira, Masanori; Rokhsar, Daniel S

fluff: exploratory analysis and visualization of high-throughput sequencing data

杂谈:高通量测序数据的探索性分析和可视化

Georgiou, Georgios; van Heeringen, Simon J

Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs.

全球绝对定量分析揭示了非洲爪蟾单个卵子中蛋白质表达的严格调控

Smits Arne H, Lindeboom Rik G H, Perino Matteo, van Heeringen Simon J, Veenstra Gert Jan C, Vermeulen Michiel

Genome-wide profiling of liver X receptor, retinoid X receptor, and peroxisome proliferator-activated receptor α in mouse liver reveals extensive sharing of binding sites

对小鼠肝脏中肝X受体、类视黄醇X受体和过氧化物酶体增殖物激活受体α的全基因组分析揭示了广泛的结合位点共享。

Boergesen, Michael; Pedersen, Thomas Åskov; Gross, Barbara; van Heeringen, Simon J; Hagenbeek, Dik; Bindesbøll, Christian; Caron, Sandrine; Lalloyer, Fanny; Steffensen, Knut R; Nebb, Hilde I; Gustafsson, Jan-Åke; Stunnenberg, Hendrik G; Staels, Bart; Mandrup, Susanne