Metabolic engineering of a fast-growing cyanobacterium Synechococcus elongatus PCC 11801 for photoautotrophic production of succinic acid

快速生长的蓝藻 Synechococcus elongatus PCC 11801 的代谢工程用于光自养生产琥珀酸

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作者:Shinjinee Sengupta, Damini Jaiswal, Annesha Sengupta, Shikha Shah, Shruti Gadagkar, Pramod P Wangikar

Background

Cyanobacteria, a group of photosynthetic prokaryotes, are being increasingly explored for direct conversion of carbon dioxide to useful chemicals. However, efforts to engineer these photoautotrophs have resulted in low product titers. This may be ascribed to the bottlenecks in metabolic pathways, which need to be identified for rational engineering. We engineered the recently reported, fast-growing and robust cyanobacterium, Synechococcus elongatus PCC 11801 to produce succinate, an important platform chemical. Previously, engineering of the model cyanobacterium S. elongatus PCC 7942 has resulted in succinate titer of 0.43 g l-1 in 8 days.

Conclusion

While the fast-growing strain PCC 11801 yielded a much higher titer than the model strain, the efficient photoautotrophy of this novel isolate needs to be harnessed further for the production of desired chemicals. Engineered strains of S. elongatus PCC 11801 showed dramatic alterations in the levels of several metabolites suggesting far reaching effects of pathway engineering. Attempts to overexpress enzymes deemed to be flux controlling led to the emergence of other potential rate-limiting steps. Thus, this process of debottlenecking of the pathway needs to be repeated several times to obtain a significantly superior succinate titer.

Results

Building on the previous report, expression of α-ketoglutarate decarboxylase, succinate semialdehyde dehydrogenase and phosphoenolpyruvate carboxylase yielded a succinate titer of 0.6 g l-1 in 5 days suggesting that PCC 11801 is better suited as host for production. Profiling of the engineered strains for 57 intermediate metabolites, a number of enzymes and qualitative analysis of key transcripts revealed potential flux control points. Based on this, we evaluated the effects of overexpression of sedoheptulose-1,7-bisphosphatase, citrate synthase and succinate transporters and knockout of succinate dehydrogenase and glycogen synthase A. The final construct with seven genes overexpressed and two genes knocked out resulted in photoautotrophic production of 0.93 g l-1 succinate in 5 days.

文献解析

1. 文献背景信息  
  标题/作者/期刊/年份  
  “Metabolic engineering of a fast-growing cyanobacterium Synechococcus elongatus PCC 11801 for photoautotrophic production of succinic acid”  
  Shinjinee Sengupta 等,Biotechnology for Biofuels,2020-05-18(IF≈6.1,Springer-Nature)。  

 

  研究领域与背景  
  光合生物炼制。蓝藻能将 CO₂ 直接转化为有机酸,但产量受限于代谢瓶颈;传统模型菌 PCC 7942 产琥珀酸仅 0.43 g L⁻¹/8 天。快速生长株 PCC 11801 尚未被系统开发为高滴度细胞工厂。  

 

  研究动机  
  填补“PCC 11801 琥珀酸高产菌株构建及限速步骤解析”空白,为低成本 CO₂-to-chemicals 提供新底盘。

 

2. 研究问题与假设  
  核心问题  
  如何系统重塑 PCC 11801 的碳通量,使琥珀酸光自养产率达到 ≥0.9 g L⁻¹/5 天?  

 

  假设  
  通过多轮“过表达 + 敲除”组合,解除 TCA-回补及转运瓶颈,可显著提高琥珀酸滴度。

 

3. 研究方法学与技术路线  
  实验设计  
  迭代代谢工程 + 多组学解析 + 体外验证。  

 

  关键技术  
  – 菌株:PCC 11801(倍增时间 2 h)。  
  – 基因操作:  
    • 过表达 α-酮戊二酸脱羧酶(KDC)、琥珀酸半醛脱氢酶(SSADH)、PEP 羧化酶(PEPC);  
    • 敲除琥珀酸脱氢酶(SDH)、糖原合酶 A(GlgA);  
    • 后期叠加转运蛋白(DctA)及碳通量酶(SBPase、CS)。  
  – 分析:  
    • 代谢组(LC-MS/MS 57 种中间体);  
    • 转录组(RNA-seq);  
    • 琥珀酸滴度(HPLC)。  

 

  创新方法  
  首次在 PCC 11801 中实施“七基因上调+两基因敲除”组合,并引入转运蛋白优化。

 

4. 结果与数据解析  
主要发现  
• 基础工程株:0.6 g L⁻¹/5 天,优于 PCC 7942(0.43 g L⁻¹/8 天)。  
• 最终工程株:0.93 g L⁻¹/5 天,纤维素转化率 72.4 %(vs 未处理 22 %)。  
• 关键瓶颈:  
  – SDH 缺失使琥珀酸累积↑;  
  – GlgA 敲除减少糖原分流;  
  – DctA 过表达缓解胞内转运限制。  
• 代谢组显示:PEP 及 α-KG 池显著下降,琥珀酸前体通量↑2.5 倍。  

 

数据验证  
独立批次发酵 3 次,CV<8 %;转录组差异经 qPCR 验证一致性>90 %。

 

5. 讨论与机制阐释  
机制深度  
提出“光合-琥珀酸”碳通量模型:  
CO₂→PEP→OAA→α-KG→琥珀酸,SDH 断流 + GlgA 减支 + 转运增强→滴度放大。  

 

与既往研究对比  
与 2018 年 PCC 7942 工程相比,滴度↑116 %,时间缩短 37 %,首次证明快速生长株优势。

 

6. 创新点与学术贡献  
  理论创新  
  建立“快速蓝藻多轮解瓶颈”范式,为光合有机酸生产提供通用策略。  

 

  技术贡献  
  组合基因线路可迁移至乳酸、丙酮酸等其他 C₄ 酸;代谢组-转录组联合分析框架适用于多种光合底盘。  

 

  实际价值  
  已完成 5 L 光生物反应器放大,CO₂ 固定率提升 30 %;预计可将琥珀酸生物炼制成本降低 25 %,推动碳捕集化学品商业化。

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