Generating and calibrating forces that are transferable across a range of state-points remains a challenging task in coarse-grained (CG) molecular dynamics. In this work, we present a coarse-graining workflow, inspired by ideas from uncertainty quantification and numerical analysis, to address this problem. The key idea behind our approach is to introduce a Bayesian correction algorithm that uses functional derivatives of CG simulations to rapidly and inexpensively recalibrate initial estimates f0 of forces anchored by standard methods such as force-matching. Taking density-temperature relationships as a running example, we demonstrate that this algorithm, in concert with various interpolation schemes, can be used to efficiently compute physically reasonable force curves on a fine grid of state-points. Importantly, we show that our workflow is robust to several choices available to the modeler, including the interpolation schemes and tools used to construct f0. In a related vein, we also demonstrate that our approach can speed up coarse-graining by reducing the number of atomistic simulations needed as inputs to standard methods for generating CG forces.
Bayesian calibration of coarse-grained forces: Efficiently addressing transferability.
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作者:Patrone Paul N, Rosch Thomas W, Phelan Frederick R Jr
| 期刊: | Journal of Chemical Physics | 影响因子: | 3.100 |
| 时间: | 2016 | 起止号: | 2016 Apr 21; 144(15):154101 |
| doi: | 10.1063/1.4945380 | ||
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