Detecting plasmid-mediated dissemination of bla (KPC-3) and bla (OXA-48-like) genes in Enterobacterales across Finnish healthcare organizations using hybrid genome assembly

利用混合基因组组装技术检测芬兰医疗机构中肠杆菌科细菌中 bla (KPC-3) 和 bla (OXA-48-like) 基因的质粒介导传播。

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Abstract

The spread of carbapenemase-producing Enterobacterales (CPE) is a global concern. While the majority of the CPE outbreaks are due to clonal spread, recent findings highlight the transmission of carbapenemase gene-carrying plasmids across various bacterial species, exacerbated by extensive antibiotic use in hospitals. This study aimed to identify plasmid-mediated horizontal transfer of carbapenemase genes among Enterobacterales isolated from patient samples and hospital environment samples in three healthcare organizations in Finland. Using a hybrid assembly of short and long reads, we could complete the genome assembly and compare the plasmids harboring the bla (KPC-3) and bla (OXA-48-like) genes. Our findings reveal indications of interspecies and intraspecies plasmid-mediated gene transfer of bla (KPC-3) and bla (OXA-48-like), emphasizing the role of horizontal gene transfer (HGT) in outbreaks. The study underscores the need for comprehensive infection control and surveillance beyond specific species to prevent the spread of antimicrobial resistance genes. These results suggest that expanding outbreak investigations to an interspecies level could be beneficial.

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