Protocol of CRISPR-Cas9 knockout screens for identifying ferroptosis regulators

用于识别铁死亡调节剂的 CRISPR-Cas9 敲除筛选方案

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作者:Xin Yang, Shoufu Duan, Zhiming Li, Zhe Wang, Ning Kon, Zhiguo Zhang, Wei Gu

Abstract

Ferroptosis, an iron-dependent programmed cell death triggered by excessive lipid peroxidation, has shown promising therapeutic potentials in human diseases. Here, we describe a protocol of a CRISPR-Cas9 loss-of-function screen to identify regulators in response to different inducers of ferroptosis. We emphasize the steps of library amplification, drug treatment, high-throughput sequencing preparation, and bioinformatics analysis using model-based analysis of genome-wide CRISPR-Cas9 knockout (MAGeCK). We also present a method to discover the regulators of ferroptosis and verify the potential targets efficiently. For complete details on use and execution of this protocol, please refer to Yang et al. (2023).1.

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