Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells

成年人、猕猴和猪海马和内嗅皮层细胞的转录组分类和神经发生轨迹

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作者:Daniel Franjic ,Mario Skarica ,Shaojie Ma ,Jon I Arellano ,Andrew T N Tebbenkamp ,Jinmyung Choi ,Chuan Xu ,Qian Li ,Yury M Morozov ,David Andrijevic ,Zvonimir Vrselja ,Ana Spajic ,Gabriel Santpere ,Mingfeng Li ,Shupei Zhang ,Yang Liu ,Joshua Spurrier ,Le Zhang ,Ivan Gudelj ,Lucija Rapan ,Hideyuki Takahashi ,Anita Huttner ,Rong Fan ,Stephen M Strittmatter ,Andre M M Sousa ,Pasko Rakic ,Nenad Sestan

Abstract

The hippocampal-entorhinal system supports cognitive functions, has lifelong neurogenic capabilities in many species, and is selectively vulnerable to Alzheimer's disease. To investigate neurogenic potential and cellular diversity, we profiled single-nucleus transcriptomes in five hippocampal-entorhinal subregions in humans, macaques, and pigs. Integrated cross-species analysis revealed robust transcriptomic and histologic signatures of neurogenesis in the adult mouse, pig, and macaque but not humans. Doublecortin (DCX), a widely accepted marker of newly generated granule cells, was detected in diverse human neurons, but it did not define immature neuron populations. To explore species differences in cellular diversity and implications for disease, we characterized subregion-specific, transcriptomically defined cell types and transitional changes from the three-layered archicortex to the six-layered neocortex. Notably, METTL7B defined subregion-specific excitatory neurons and astrocytes in primates, associated with endoplasmic reticulum and lipid droplet proteins, including Alzheimer's disease-related proteins. This resource reveals cell-type- and species-specific properties shaping hippocampal-entorhinal neurogenesis and function. Keywords: Alzheimer’s disease; METTL7B; adult neurogenesis; doublecortin; entorhinal cortex; evolution; hippocampus; immature neurons; neuroblast; single-cell RNA-seq.

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