A combinatorial genetic strategy for exploring complex genotype-phenotype associations in cancer

探索癌症复杂基因型-表型关联的组合遗传策略

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作者:Shan Li #, Alicia Wong #, Huiyun Sun #, Vipul Bhatia, Gerardo Javier, Sujata Jana, Qian Wu, Robert B Montgomery, Jonathan L Wright, Hung-Ming Lam, Andrew C Hsieh, Bishoy M Faltas, Michael C Haffner, John K Lee

Abstract

Available genetically defined cancer models are limited in genotypic and phenotypic complexity and underrepresent the heterogeneity of human cancer. Here, we describe a combinatorial genetic strategy applied to an organoid transformation assay to rapidly generate diverse, clinically relevant bladder and prostate cancer models. Importantly, the clonal architecture of the resultant tumors can be resolved using single-cell or spatially resolved next-generation sequencing to uncover polygenic drivers of cancer phenotypes.

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