Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages

广泛分布的陆地噬菌体中磷获取基因的隐藏多样性和潜在生态功能

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作者:Jie-Liang Liang, Shi-Wei Feng, Jing-Li Lu, Xiao-Nan Wang, Feng-Lin Li, Yu-Qian Guo, Shen-Yan Liu, Yuan-Yue Zhuang, Sheng-Ji Zhong, Jin Zheng, Ping Wen, Xinzhu Yi, Pu Jia, Bin Liao, Wen-Sheng Shu, Jin-Tian Li

Abstract

Phosphorus (P) limitation of ecosystem processes is widespread in terrestrial habitats. While a few auxiliary metabolic genes (AMGs) in bacteriophages from aquatic habitats are reported to have the potential to enhance P-acquisition ability of their hosts, little is known about the diversity and potential ecological function of P-acquisition genes encoded by terrestrial bacteriophages. Here, we analyze 333 soil metagenomes from five terrestrial habitat types across China and identify 75 viral operational taxonomic units (vOTUs) that encode 105 P-acquisition AMGs. These AMGs span 17 distinct functional genes involved in four primary processes of microbial P-acquisition. Among them, over 60% (11/17) have not been reported previously. We experimentally verify in-vitro enzymatic activities of two pyrophosphatases and one alkaline phosphatase encoded by P-acquisition vOTUs. Thirty-six percent of the 75 P-acquisition vOTUs are detectable in a published global topsoil metagenome dataset. Further analyses reveal that, under certain circumstances, the identified P-acquisition AMGs have a greater influence on soil P availability and are more dominant in soil metatranscriptomes than their corresponding bacterial genes. Overall, our results reinforce the necessity of incorporating viral contributions into biogeochemical P cycling.

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