Abstract
This study examines the genetic variation and structure of the spectacled caiman (Caiman crocodilus) on Gorgona Island, Colombia, compared to continental populations. We analyzed 178 partial Cytochrome b gene sequences, most of which were obtained from GenBank, and identified 23 haplogroups, with five of these specifically found on the Island. Phylogenetic analysis using maximum likelihood placed C. crocodilus, including the Gorgona Island population, in a distinct monophyletic group. Genetic structure analysis identified two main clusters, with Gorgona Island caimans primarily assigned to the Trans-Andean cluster. The haplogroup network illustrates the two major groups, with a maximum of 12 mutational steps between them. Additionally, Tajima's D statistic suggests an excess of rare alleles in the spectacled caiman. Genetic differentiation across regions suggests historical isolation, likely shaped by geographical barriers and limited gene flow. The distinct genetic patterns of island populations highlight their disparity in terms of evolutionary dynamics and conservation importance. Further genomic analysis is recommended to explore demographic history. Conservation strategies should prioritize the maintenance of genetic diversity to mitigate the effects of isolation, while also incorporating insights from the species' biogeographic history. Our findings highlight the unique contribution of the small population in Gorgona Island to the species' spatial genetic structure.