Abstract
Low-temperature (LT) stress remains a challenge in rice cultivation and breeding. Despite global warming, cold waves cause damage to rice plants, particularly during pollen development. LTs during early panicle formation worsen pollen formation defects, but the underlying mechanisms remain unclear. We investigated the effects of low temperatures (19.0 °C and 18.5 °C) throughout reproductive growth on the panicle architecture and fertility of 28 japonica rice varieties with different LT tolerances. LT-sensitive varieties like Sasanishiki and conventional LT-tolerant varieties like Hitomebore showed increased spikelet densities on basal branches, whereas extremely LT-tolerant varieties like Tohoku 234 maintained a stable panicle architecture. RNA sequencing of the early panicles revealed LT-induced expression of stress response genes in all varieties. Compared with Hitomebore and Sasanishiki, in Tohoku 234, the expression of genes involved in flowering and sugar metabolism-such as OsGI and OsTOC1-showed stepwise induction with decreasing temperatures, while the expression of genes related to the cell cycle exhibited stepwise suppression. In addition, 24 genes with variety-specific expression patterns were identified. These findings suggested that LTs during the early reproductive stage increased spikelet numbers, along with total anther numbers, which may reduce the pollen formation capacity within each anther in LT-susceptible varieties. This study offers insights into rice's LT tolerance mechanisms.