Immunologic features of nontuberculous mycobacterial pulmonary disease based on spatially resolved whole transcriptomics

基于空间分辨全转录组学的非结核分枝杆菌肺部疾病的免疫学特征

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作者:Jaemoon Koh, Sehui Kim, Joong-Yub Kim, Jae-Joon Yim, Nakwon Kwak

Background

The immunologic features of nontuberculous mycobacterial pulmonary disease (NTM-PD) are largely unclear. This study investigated the immunologic features of NTM-PD using digital spatial profiling techniques.

Conclusions

NTM-PD exhibits distinct immunologic signatures characterized by the activation of macrophages without T cell activation.

Methods

Lung tissues obtained from six patients with NTM-PD between January 1, 2006, and December 31, 2020, at Seoul National University Hospital were subjected to RNA sequencing. Cores from the peribronchial areas were stained with CD3, CD68, and DNASyto13, and gene expression at the whole-transcriptome level was quantified using PCR amplification and Illumina sequencing. Lung tissues from six patients with bronchiectasis collected during the same period were used as controls. The RNA sequencing

Results

NTM-PD exhibited distinct gene expression patterns in T cells and macrophages. Gene set enrichment analysis revealed that pathways related to antigen presentation and processing were upregulated in NTM-PD, particularly in macrophages. Macrophages were more prevalent and the expression of genes associated with the M1 phenotype (CD40 and CD80) was significantly elevated. Although macrophages were activated in the NTM-PD group T cell activity was unaltered. Notably, expression of the costimulatory molecule CD28 was decreased in NTM-PD. IHC analysis showed that T cells expressing Foxp3 or TIM-3, which facilitate the regulatory functions of T cells, were increased. Conclusions: NTM-PD exhibits distinct immunologic signatures characterized by the activation of macrophages without T cell activation.

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