An RNA-immunoprecipitation via CRISPR/dCas13 reveals an interaction between the SARS-CoV-2 5'UTR RNA and the process of human lipid metabolism

通过 CRISPR/dCas13 进行的 RNA 免疫沉淀揭示了 SARS-CoV-2 5'UTR RNA 与人类脂质代谢过程之间的相互作用

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作者:Yurika Shimizu, Srinivas Bandaru, Mari Hara, Sonny Young, Toshikazu Sano, Kaya Usami, Yuta Kurano, Suni Lee, Naoko Kumagai-Takei, Shogo Takashiba, Shunji Sano, Tatsuo Ito

Abstract

We herein elucidate the function of SARS-CoV-2derived 5'UTR in the human cells. 5'UTR bound host cellular RNAs were immunoprecipitated by gRNA-dCas13 (targeting luciferase RNA fused to SARS-CoV-2 5'UTR) in HEK293T and A549 cells. The 5'UTR bound RNA extractions were predominantly enriched for regulating lipid metabolism. Overexpression of SARS-CoV-2 5'UTR RNA altered the expression of factors involved in the process of the human Mevalonate pathway. In addition, we found that HMG-CoA reductase inhibitors were shown to suppress SARS-CoV-2 5'UTR-mediated translation activities. In conclusion, we deduce the array of host RNAs interacting with SARS-CoV-2 5'UTR that drives SARS-CoV-2 translation and influences host metabolic pathways.

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