Deep Learning for Drug Discovery and Cancer Research: Automated Analysis of Vascularization Images

深度学习在药物研发和癌症研究中的应用:血管化图像的自动分析

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作者:Gregor Urban, Kevin M Bache, Duc Phan, Agua Sobrino, Alexander Konstantinovich Shmakov, Stephanie J Hachey, Chris Hughes, Pierre Baldi

Abstract

Likely drug candidates which are identified in traditional pre-clinical drug screens often fail in patient trials, increasing the societal burden of drug discovery. A major contributing factor to this phenomenon is the failure of traditional in vitro models of drug response to accurately mimic many of the more complex properties of human biology. We have recently introduced a new microphysiological system for growing vascularized, perfused microtissues that more accurately models human physiology and is suitable for large drug screens. In this work, we develop a machine learning model that can quickly and accurately flag compounds which effectively disrupt vascular networks from images taken before and after drug application in vitro. The system is based on a convolutional neural network and achieves near perfect accuracy while committing potentially no expensive false negatives.

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