Machine Learning-Based Integration of Single-Cell and Bulk Transcriptome Reveals Coagulation Signature and Phenotypic Heterogeneity in Hepatocellular Carcinoma

基于机器学习的单细胞和整体转录组整合揭示肝细胞癌的凝血特征和表型异质性

阅读:2

Abstract

Primary liver cancer ranks as the third most lethal cancer globally, with hepatocellular carcinoma (HCC) being the most prevalent pathologic type. The liver plays a crucial role in maintaining normal coagulation function by synthesising, regulating and clearing coagulation factors and other bioactive substances involved in coagulation. Although several previous studies have proposed coagulation-associated prognostic models in HCC, the mechanisms at the single-cell level are not fully elucidated. In this study, the coagulation subtypes and their heterogeneity of HCC malignant cells were identified based on the coagulation-related genes collected from KEGG and GO databases. Through machine learning algorithms, we defined a coagulation gene signature at the single-cell level, based on which a coagulation-associated risk score (CARS) model was constructed in the TCGA-LIHC cohort. Integrating clinicopathological information and the CARS, a nomogram model was further developed for individualised prognostic assessment. Additionally, the mechanisms of prognostic differences among patients with divergent coagulation-associated risks were dissected through tumour signalling pathways, cellular communication and pseudotime trajectory analysis, while exploring the potential application of this risk assessment system in HCC treatment. In conclusion, the established CARS system accurately predicts prognosis, providing an important theoretical basis for precision treatment of HCC.

特别声明

1、本页面内容包含部分的内容是基于公开信息的合理引用;引用内容仅为补充信息,不代表本站立场。

2、若认为本页面引用内容涉及侵权,请及时与本站联系,我们将第一时间处理。

3、其他媒体/个人如需使用本页面原创内容,需注明“来源:[生知库]”并获得授权;使用引用内容的,需自行联系原作者获得许可。

4、投稿及合作请联系:info@biocloudy.com。