Abstract
The rumen microbial consortium has long been viewed as a “black box”, where we recognize what goes in, and most of what comes out, but the ruminal catabolic and anabolic activity remains shrouded in uncertainty. Microbiologists from the 1940s through the early 2000s identified microbes responsible for ruminal feedstuff degradation, highlighted animal-important fermentation endproducts (such as volatile fatty acids, VFA), and examined how microbes interacted with each other (e.g., interspecies hydrogen transfer), and with the host animal. However, our knowledge was dependent on our ability to grow anaerobic microbes in pure or mixed cultures, but it became apparent that our limiting factor was that we could culture <10% of the ruminal microbes. In the past 15 years, there has been a proliferation of new techniques to identify what is occurring in the rumen of live ruminants such as, culturable and unculturable microorganism populations, microbial biochemical pathways and important metabolic intermediates, potential interactions between microbes, and biologically relevant endproducts that impact host animal physiology, health, and production efficiency. As Next Generation Sequencing (NGS) has become increasingly affordable, there has been a surge in research examining the “microbiome” with a resultant influx of massive datasets. However, without the ability to connect microbial populations to biochemical degradative pathways, endproducts, microbial interactions or animal production parameters, this information is of limited impact in ruminant nutrition. Ruminant nutrition is on a precipice where we can finally fully integrate microbiology with metabolomics and animal performance and nutrition. Advancements in ruminal microbiology will allow us to fully grasp the functional nature of the microbial ecosystem and where it fits within ruminant nutrition, which will improve animal productivity and ruminant-derived protein food production sustainability.