Single-cell RNA-seq analysis reveals BHLHE40-driven pro-tumour neutrophils with hyperactivated glycolysis in pancreatic tumour microenvironment

单细胞RNA测序分析揭示胰腺肿瘤微环境中BHLHE40驱动的促肿瘤中性粒细胞具有过度激活的糖酵解作用

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作者:Liwen Wang # ,Yihao Liu # ,Yuting Dai # ,Xiaomei Tang # ,Tong Yin ,Chaofu Wang ,Ting Wang ,Lei Dong ,Minmin Shi ,Jiejie Qin ,Meilin Xue ,Yizhi Cao ,Jia Liu ,Pengyi Liu ,Jinyan Huang ,Chenlei Wen ,Jun Zhang ,Zhiwei Xu ,Fan Bai ,Xiaxing Deng ,Chenghong Peng ,Hao Chen ,Lingxi Jiang ,Saijuan Chen ,Baiyong Shen

Abstract

Objective: Innate immunity plays important roles in pancreatic ductal adenocarcinoma (PDAC), as non-T-cell-enriched tumour. Neutrophils are major players in innate immune system. Here, we aimed to explore the heterogeneity and pro-tumour mechanisms of neutrophils in PDAC. Design: We analysed single-cell transcriptomes of peripheral blood polymorphonuclear leucocytes (PMNs) and tumour-infiltrating immune cells from five patients with PDAC, and performed immunofluorescence/immunohistochemistry staining, multi-omics analysis and in vitro experiments to validate the discoveries of bioinformatics analysis. Results: Exploration of the heterogeneity of tumour-associated neutrophils (TANs) revealed a terminally differentiated pro-tumour subpopulation (TAN-1) associated with poor prognosis, an inflammatory subpopulation (TAN-2), a population of transitional stage that have just migrated to tumour microenvironment (TAN-3) and a subpopulation preferentially expressing interferon-stimulated genes (TAN-4). Glycolysis signature was upregulated along neutrophil transition trajectory, and TAN-1 was featured with hyperactivated glycolytic activity. The glycolytic switch of TANs was validated by integrative multi-omics approach of transcriptomics, proteomics and metabolomics analysis. Activation of glycolytic activity by LDHA overexpression induced immunosuppression and pro-tumour functions in neutrophil-like differentiated HL-60 (dHL-60) cells. Mechanistic studies revealed BHLHE40, downstream to hypoxia and endoplasmic reticulum stress, was a key regulator in polarisation of neutrophils towards TAN-1 phenotype, and direct transcriptional regulation of BHLHE40 on TAN-1 marker genes was demonstrated by chromatin immunoprecipitation assay. Pro-tumour and immunosuppression functions were observed in dHL-60 cells overexpressing BHLHE40. Importantly, immunohistochemistry analysis of PDAC tissues revealed the unfavourable prognostic value of BHLHE40+ neutrophils. Conclusion: The dynamic properties of TANs revealed by this study will be helpful in advancing PDAC therapy targeting innate immunity.

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