DIMPLE: deep insertion, deletion, and missense mutation libraries for exploring protein variation in evolution, disease, and biology

DIMPLE:深度插入、缺失和错义突变库,用于探索进化、疾病和生物学中的蛋白质变异

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作者:Christian B Macdonald, David Nedrud, Patrick Rockefeller Grimes, Donovan Trinidad, James S Fraser, Willow Coyote-Maestas

Abstract

Insertions and deletions (indels) enable evolution and cause disease. Due to technical challenges, indels are left out of most mutational scans, limiting our understanding of them in disease, biology, and evolution. We develop a low cost and bias method, DIMPLE, for systematically generating deletions, insertions, and missense mutations in genes, which we test on a range of targets, including Kir2.1. We use DIMPLE to study how indels impact potassium channel structure, disease, and evolution. We find deletions are most disruptive overall, beta sheets are most sensitive to indels, and flexible loops are sensitive to deletions yet tolerate insertions.

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