日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Haplotype-resolved centromeric chromatin organization from a complete diploid human genome

从完整的二倍体人类基因组中获得的单倍型解析的着丝粒染色质组织结构

Xu, Yuan; Loucks, Hailey; Menendez, Julian; Ryabov, Fedor; Lucas, Julian K; Cechova, Monika; Morina, Luke; Xu, Emily; Dubocanin, Danilo; Chittenden, Cy; Asri, Mobin; Violich, Ivo; Ortiz, Christian; Gardner, Joshua M V; Hillaker, Todd; O'Rourke, Sara; McNulty, Brandy; Potapova, Tamara A; Mitchell, Matthew W; Schwartz, Jacob P; Straight, Aaron F; Gerton, Jennifer L; Timp, Winston; Alexandrov, Ivan A; Altemose, Nicolas; Miga, Karen H

NKX2-1 drives neuroendocrine transdifferentiation of prostate cancer via epigenetic and 3D chromatin remodeling

NKX2-1通过表观遗传和3D染色质重塑驱动前列腺癌的神经内分泌转分化

Xiaodong Lu #,Viriya Keo #,Irina Cheng,Wanqing Xie,Galina Gritsina,Juan Wang,Lina Lu,Cheng-Kai Shiau,Yueying He,Qiushi Jin,Peng Jin,Martin G Sanda,Victor G Corces,Nicolas Altemose,Ruli Gao,Jonathan C Zhao,Jindan Yu

DNA methylation influences human centromere positioning and function.

DNA甲基化影响人类着丝粒的定位和功能。

Salinas-Luypaert Catalina, Dubocanin Danilo, Lee Rosa Jooyoung, Andrade Ruiz Lorena, Gamba Riccardo, Grison Marine, Velikovsky Leonid, Angrisani Annapaola, Scelfo Andrea, Xu Yuan, Dumont Marie, Barra Viviana, Wilhelm Therese, Velasco Guillaume, Losito Marialucrezia, Wardenaar René, Francastel Claire, Foijer Floris, Kops Geert J P L, Miga Karen H, Altemose Nicolas, Fachinetti Daniele

Integrating Single-Molecule Sequencing and Deep Learning to Predict Haplotype-Specific 3D Chromatin Organization in a Mendelian Condition

整合单分子测序和深度学习技术预测孟德尔遗传病中单倍型特异性三维染色质结构

Dubocanin, Danilo; Kalygina, Anna; Franklin, J Matthew; Chittenden, Cy; Vollger, Mitchell R; Neph, Shane; Stergachis, Andrew B; Altemose, Nicolas

A telomere-to-telomere map of somatic mutation burden and functional impact in cancer

癌症中体细胞突变负荷和功能影响的端粒到端粒图谱

Sohn, Min-Hwan; Dubocanin, Danilo; Vollger, Mitchell R; Kwon, Youngjun; Minkina, Anna; Munson, Katherine M; Hart, Samuel Fm; Ranchalis, Jane E; Parmalee, Nancy L; Sedeño-Cortés, Adriana E; Ou, Jeffrey; Au, Natalie Yt; Bohaczuk, Stephanie; Carroll, Brianne; Frazar, Christian D; Harvey, William T; Hoekzema, Kendra; Huang, Meng-Fan; Jacques, Caitlin N; Jensen, Dana M; Kolar, J Thomas; Lee, Rosa; Lin, Jiadong; Loy, Kelsey; Mack, Taralynn; Mao, Yizi; Pham, Meranda M; Ryke, Erica; Smith, Joshua D; Sutherlin, Lila; Swanson, Elliott G; Weiss, Jeffrey M; Wg, SMaHT Assembly; Carvalho, Claudia; Coorens, Tim Hh; Harris, Kelley; Wei, Chia-Lin; Eichler, Evan E; Altemose, Nicolas; Bennett, James T; Stergachis, Andrew B

A complete diploid human genome benchmark for personalized genomics

用于个性化基因组学的完整二倍体人类基因组基准

Hansen, Nancy F; Dwarshuis, Nathan; Ji, Hyun Joo; Rhie, Arang; Loucks, Hailey; Logsdon, Glennis A; Vollger, Mitchell R; Storer, Jessica M; Kim, Juhyun; Adam, Eleni; Altemose, Nicolas; Antipov, Dmitry; Asri, Mobin; Barreira, Sofia; Bohaczuk, Stephanie C; Bzikadze, Andrey V; Carioscia, Sara A; Carroll, Andrew; Chao, Kuan-Hao; Chu, Yanan; Das, Arun; Ebert, Peter; English, Adam; Fleharty, Mark; Fleming, Laura E; Formenti, Giulio; Guarracino, Andrea; Hartley, Gabrielle A; Jenike, Katharine; Kalleberg, Jenna; Kang, Yu; King, Robert; Lipovac, Josipa; Mastoras, Mira; Mitchell, Matthew W; Negi, Shloka; Olson, Nathan D; Oshima, Keisuke K; Paulin, Luis F; Pickett, Brandon D; Porubsky, David; Ranchalis, Jane; Ranjan, Desh; Rautiainen, Mikko; Riethman, Harold; Schnabel, Robert D; Sedlazeck, Fritz J; Shafin, Kishwar; Sikic, Mile; Solar, Steven J; Sweeten, Alexander P; Timp, Winston; Wagner, Justin; Yoo, DongAhn; Zhou, Ying; Garrison, Erik; Eichler, Evan E; Schatz, Michael C; Stergachis, Andrew B; O'Neill, Rachel J; Miga, Karen H; Salzberg, Steven L; Koren, Sergey; Zook, Justin M; Phillippy, Adam M

DiMeLo-cito: a one-tube protocol for mapping protein-DNA interactions reveals CTCF bookmarking in mitosis.

DiMeLo-cito:一种用于绘制蛋白质-DNA相互作用图谱的单管方案揭示了有丝分裂中的CTCF标记

Gamarra Nathan, Chittenden Cy, Sundararajan Kousik, Schwartz Jacob P, Lundqvist Sofia, Robles Denise, Dixon-Luinenburg Oberon, Marcus Jeremy, Maslan Annie, Franklin J Matthew, Streets Aaron, Straight Aaron F, Altemose Nicolas

Human Satellite 3 DNA encodes megabase-scale transcription factor binding platforms.

人类卫星3 DNA编码兆碱基规模的转录因子结合平台

Franklin J Matthew, Dubocanin Danilo, Chittenden Cy, Barillas Ashlie, Lee Rosa Jooyoung, Ghosh Rajarshi P, Gerton Jennifer L, Guan Kun-Liang, Altemose Nicolas

Enhancing transcription-replication conflict targets ecDNA-positive cancers

增强转录-复制冲突靶向ecDNA阳性癌症

Jun Tang # ,Natasha E Weiser # ,Guiping Wang # ,Sudhir Chowdhry ,Ellis J Curtis ,Yanding Zhao ,Ivy Tsz-Lo Wong ,Georgi K Marinov ,Rui Li ,Philip Hanoian ,Edison Tse ,Salvador Garcia Mojica ,Ryan Hansen ,Joshua Plum ,Auzon Steffy ,Snezana Milutinovic ,S Todd Meyer ,Jens Luebeck ,Yanbo Wang ,Shu Zhang ,Nicolas Altemose ,Christina Curtis ,William J Greenleaf ,Vineet Bafna ,Stephen J Benkovic ,Anthony B Pinkerton ,Shailaja Kasibhatla ,Christian A Hassig ,Paul S Mischel ,Howard Y Chang

Mapping protein-DNA interactions with DiMeLo-seq

使用 DiMeLo-seq 绘制蛋白质-DNA 相互作用

Annie Maslan, Nicolas Altemose, Jeremy Marcus, Reet Mishra, Lucy D Brennan, Kousik Sundararajan, Gary Karpen, Aaron F Straight, Aaron Streets1