日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Fine-tuned GPT-based foundation models effectively reconstruct bacterial transcriptional regulatory networks from literature

经过微调的基于GPT的基础模型能够有效地从文献中重建细菌转录调控网络。

Romero-Vilchis, José; Barajas-Sánchez, Maximiliano; Azpeitia-García, Karyme-Ivette; Posada-Reyes, Ali-Berenice; Collado-Vides, Julio; Méndez-Cruz, Carlos-Francisco

Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli.

大肠杆菌体内转录因子DNA结合谱汇编的预测性生物物理神经网络建模

Lally Patrick, Gómez-Romero Laura, Tierrafría Víctor H, Aquino Patricia, Rioualen Claire, Zhang Xiaoman, Kim Sunyoung, Baniulyte Gabriele, Plitnick Jonathan, Smith Carol, Babu Mohan, Collado-Vides Julio, Wade Joseph T, Galagan James E

The EcoCyc database (2025)

EcoCyc数据库(2025年)

Karp, Peter D; Paley, Suzanne; Caspi, Ron; Kothari, Anamika; Krummenacker, Markus; Midford, Peter E; Moore, Lisa R; Subhraveti, Pallavi; Gama-Castro, Socorro; Tierrafria, Víctor H; Lara, Paloma; Muñiz-Rascado, Luis; Bonavides-Martinez, César; Santos-Zavaleta, Alberto; Mackie, Amanda; Sun, Gwanggyu; Ahn-Horst, Travis A; Choi, Heejo; Juenemann, Riley; Knudsen, Cyrus N M; Covert, Markus W; Collado-Vides, Julio; Paulsen, Ian

RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12

RegulonDB v12.0:大肠杆菌K-12转录调控的综合资源

Salgado, Heladia; Gama-Castro, Socorro; Lara, Paloma; Mejia-Almonte, Citlalli; Alarcón-Carranza, Gabriel; López-Almazo, Andrés G; Betancourt-Figueroa, Felipe; Peña-Loredo, Pablo; Alquicira-Hernández, Shirley; Ledezma-Tejeida, Daniela; Arizmendi-Zagal, Lizeth; Mendez-Hernandez, Francisco; Diaz-Gomez, Ana K; Ochoa-Praxedis, Elizabeth; Muñiz-Rascado, Luis J; García-Sotelo, Jair S; Flores-Gallegos, Fanny A; Gómez, Laura; Bonavides-Martínez, César; Del Moral-Chávez, Víctor M; Hernández-Alvarez, Alfredo J; Santos-Zavaleta, Alberto; Capella-Gutierrez, Salvador; Gelpi, Josep Lluis; Collado-Vides, Julio

Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types

大肠杆菌K-12转录因子调控相互作用的灵活黄金标准:证据类型的架构

Lara, Paloma; Gama-Castro, Socorro; Salgado, Heladia; Rioualen, Claire; Tierrafría, Víctor H; Muñiz-Rascado, Luis J; Bonavides-Martínez, César; Collado-Vides, Julio

A Cryptic Prophage Transcription Factor Drives Phenotypic Changes via Host Gene Regulation

隐秘的原噬菌体转录因子通过宿主基因调控驱动表型改变

P Lally, V H Tierrafría, L Gómez-Romero, A Stringer, J Collado-Vides, J T Wade, J E Galagan

Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli

大肠杆菌体内转录因子 DNA 结合谱的预测生物物理神经网络建模

Patrick Lally, Laura Gómez-Romero, Víctor H Tierrafría, Patricia Aquino, Claire Rioualen, Xiaoman Zhang, Sunyoung Kim, Gabriele Baniulyte, Jonathan Plitnick, Carol Smith, Mohan Babu, Julio Collado-Vides, Joseph T Wade, James E Galagan

A Gold Standard for Transcription Factor Regulatory Interactions in Escherichia coli K-12: Architecture of Evidence Types

大肠杆菌K-12转录因子调控相互作用的黄金标准:证据类型的结构

Lara, Paloma; Gama-Castro, Socorro; Salgado, Heladia; Rioualen, Claire; Tierrafría, Víctor H; Muñiz-Rascado, Luis J; Bonavides-Martínez, César; Collado-Vides, Julio

Sensory Systems and Transcriptional Regulation in Escherichia coli

大肠杆菌的感觉系统和转录调控

Femerling, Georgette; Gama-Castro, Socorro; Lara, Paloma; Ledezma-Tejeida, Daniela; Tierrafría, Víctor H; Muñiz-Rascado, Luis; Bonavides-Martínez, César; Collado-Vides, Julio

RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12

RegulonDB 11.0:大肠杆菌 K-12 转录调控的综合高通量数据集

Tierrafría, Víctor H; Rioualen, Claire; Salgado, Heladia; Lara, Paloma; Gama-Castro, Socorro; Lally, Patrick; Gómez-Romero, Laura; Peña-Loredo, Pablo; López-Almazo, Andrés G; Alarcón-Carranza, Gabriel; Betancourt-Figueroa, Felipe; Alquicira-Hernández, Shirley; Polanco-Morelos, J Enrique; García-Sotelo, Jair; Gaytan-Nuñez, Estefani; Méndez-Cruz, Carlos-Francisco; Muñiz, Luis J; Bonavides-Martínez, César; Moreno-Hagelsieb, Gabriel; Galagan, James E; Wade, Joseph T; Collado-Vides, Julio