日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

STAT3 S727 phosphorylation drives pathogenic Th17 differentiation and neuroinflammation in autoimmune disease

STAT3 S727 磷酸化驱动自身免疫性疾病中的致病性 Th17 分化和神经炎症

Prado, Douglas S; Kutuva, Achyudhan R; Cattley, Richard T; Sonego, Andreza Buzolin; Sutariya, Parth; Im, Elena; Wu, Shuxian; Lee, Mijoon; Cumberland, Rachel L; Mehta, Isha; Delgoffe, Greg M; Boggess, William C; Faeder, James R; Shlomchik, Mark J; Hawse, William F

A detailed kinetic model of Eastern equine encephalitis virus replication in a susceptible host cell

易感宿主细胞内东部马脑炎病毒复制的详细动力学模型

Larkin, Caroline I; Dunn, Matthew D; Shoemaker, Jason E; Klimstra, William B; Faeder, James R

Predicting gene-level sensitivity to JAK-STAT signaling perturbation using a mechanistic-to-machine learning framework.

利用机制到机器学习框架预测基因水平对JAK-STAT信号扰动的敏感性

Cheemalavagu Neha, Shoger Karsen E, Cao Yuqi M, Michalides Brandon A, Botta Samuel A, Faeder James R, Gottschalk Rachel A

MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface

MCell4 与 BioNetGen:一个具有 Python 接口的基于规则的反应扩散系统的蒙特卡罗模拟器

Husar, Adam; Ordyan, Mariam; Garcia, Guadalupe C; Yancey, Joel G; Saglam, Ali S; Faeder, James R; Bartol, Thomas M; Kennedy, Mary B; Sejnowski, Terrence J

A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]

WESTPA 2.0 稀有事件采样软件教程集 [文章 v2.0]

Bogetti, Anthony T; Leung, Jeremy M G; Russo, John D; Zhang, She; Thompson, Jeff P; Saglam, Ali S; Ray, Dhiman; Mostofian, Barmak; Pratt, A J; Abraham, Rhea C; Harrison, Page O; Dudek, Max; Torrillo, Paul A; DeGrave, Alex J; Adhikari, Upendra; Faeder, James R; Andricioaei, Ioan; Adelman, Joshua L; Zwier, Matthew C; LeBard, David N; Zuckerman, Daniel M; Chong, Lillian T

BioSimulators: a central registry of simulation engines and services for recommending specific tools

BioSimulators:一个集中式的仿真引擎和服务注册中心,用于推荐特定工具

Shaikh, Bilal; Smith, Lucian P; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S; Anwar, Azraf; Beber, Moritz E; Bergmann, Frank T; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G Bard; Faeder, James R; Freiburger, Andrew P; Fröhlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C; Jahn, Diego; Jakubowski, Henry V; Jordan, Ryann; Kalaš, Matúš; König, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S Malik; Mandal, Synchon; McDougal, Robert; Medley, J Kyle; Mendes, Pedro; Müller, Robert; Myers, Chris J; Naldi, Aurelien; Nguyen, Tung V N; Nickerson, David P; Olivier, Brett G; Patoliya, Drashti; Paulevé, Loïc; Petzold, Linda R; Priya, Ankita; Rampadarath, Anand K; Rohwer, Johann M; Saglam, Ali S; Singh, Dilawar; Sinha, Ankur; Snoep, Jacky; Sorby, Hugh; Spangler, Ryan; Starruß, Jörn; Thomas, Payton J; van Niekerk, David; Weindl, Daniel; Zhang, Fengkai; Zhukova, Anna; Goldberg, Arthur P; Schaff, James C; Blinov, Michael L; Sauro, Herbert M; Moraru, Ion I; Karr, Jonathan R

Model Integration in Computational Biology: The Role of Reproducibility, Credibility and Utility

计算生物学中的模型整合:可重复性、可信度和实用性的作用

Karr, Jonathan; Malik-Sheriff, Rahuman S; Osborne, James; Gonzalez-Parra, Gilberto; Forgoston, Eric; Bowness, Ruth; Liu, Yaling; Thompson, Robin; Garira, Winston; Barhak, Jacob; Rice, John; Torres, Marcella; Dobrovolny, Hana M; Tang, Tingting; Waites, William; Glazier, James A; Faeder, James R; Kulesza, Alexander

Iterative community-driven development of a SARS-CoV-2 tissue simulator

SARS-CoV-2 组织模拟器的迭代式社区驱动开发

Getz, Michael; Wang, Yafei; An, Gary; Asthana, Maansi; Becker, Andrew; Cockrell, Chase; Collier, Nicholson; Craig, Morgan; Davis, Courtney L; Faeder, James R; Ford Versypt, Ashlee N; Mapder, Tarunendu; Gianlupi, Juliano F; Glazier, James A; Hamis, Sara; Heiland, Randy; Hillen, Thomas; Hou, Dennis; Islam, Mohammad Aminul; Jenner, Adrianne L; Kurtoglu, Furkan; Larkin, Caroline I; Liu, Bing; Macfarlane, Fiona; Maygrundter, Pablo; Morel, Penelope A; Narayanan, Aarthi; Ozik, Jonathan; Pienaar, Elsje; Rangamani, Padmini; Saglam, Ali Sinan; Shoemaker, Jason Edward; Smith, Amber M; Weaver, Jordan J A; Macklin, Paul

SBML Level 3: an extensible format for the exchange and reuse of biological models

SBML 3级:一种用于交换和重用生物模型的可扩展格式

Keating, Sarah M; Waltemath, Dagmar; König, Matthias; Zhang, Fengkai; Dräger, Andreas; Chaouiya, Claudine; Bergmann, Frank T; Finney, Andrew; Gillespie, Colin S; Helikar, Tomáš; Hoops, Stefan; Malik-Sheriff, Rahuman S; Moodie, Stuart L; Moraru, Ion I; Myers, Chris J; Naldi, Aurélien; Olivier, Brett G; Sahle, Sven; Schaff, James C; Smith, Lucian P; Swat, Maciej J; Thieffry, Denis; Watanabe, Leandro; Wilkinson, Darren J; Blinov, Michael L; Begley, Kimberly; Faeder, James R; Gómez, Harold F; Hamm, Thomas M; Inagaki, Yuichiro; Liebermeister, Wolfram; Lister, Allyson L; Lucio, Daniel; Mjolsness, Eric; Proctor, Carole J; Raman, Karthik; Rodriguez, Nicolas; Shaffer, Clifford A; Shapiro, Bruce E; Stelling, Joerg; Swainston, Neil; Tanimura, Naoki; Wagner, John; Meier-Schellersheim, Martin; Sauro, Herbert M; Palsson, Bernhard; Bolouri, Hamid; Kitano, Hiroaki; Funahashi, Akira; Hermjakob, Henning; Doyle, John C; Hucka, Michael

Parallel Tempering with Lasso for model reduction in systems biology

系统生物学中基于 Lasso 的并行退火模型简化

Gupta, Sanjana; Lee, Robin E C; Faeder, James R