日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Severus 利用长读长测序技术检测癌症基因组中的体细胞结构变异和复杂重排。

Keskus, Ayse G; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S; Paten, Benedict; Kolmogorov, Mikhail

Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

更正:开发并广泛测序了经广泛认可的“瓶中基因组”匹配的肿瘤-正常样本对

McDaniel, Jennifer H; Patel, Vaidehi; Olson, Nathan D; He, Hua-Jun; He, Zhiyong; Cole, Kenneth D; Gooden, Alexander A; Schmitt, Anthony; Sikkink, Kristin; Sedlazeck, Fritz J; Doddapaneni, Harsha; Jhangiani, Shalini N; Muzny, Donna M; Gingras, Marie-Claude; Mehta, Heer; Behera, Sairam; Paulin, Luis F; Hastie, Alex R; Yu, Hung-Chun; Weigman, Victor; Rojas, Alison; Kennedy, Katie; Remington, Jamie; Salas-González, Isai; Sudkamp, Mitch; Wiseman, Kelly; Lajoie, Bryan R; Levy, Shawn; Jain, Miten; Akeson, Stuart; Narzisi, Giuseppe; Steinsnyder, Zoe; Reeves, Catherine; Shelton, Jennifer; Kingan, Sarah B; Lambert, Christine; Baybayan, Primo; Wenger, Aaron M; McLaughlin, Ian J; Adamson, Aaron; Kingsley, Christopher; Wescott, Melanie; Kim, Young; Paten, Benedict; Park, Jimin; Violich, Ivo; Miga, Karen H; Gardner, Joshua; McNulty, Brandy; Rosen, Gail L; McCoy, Rajiv; Brundu, Francesco; Sayyari, Erfan; Scheffler, Konrad; Truong, Sean; Catreux, Severine; Hannah, Lesley Chapman; Lipson, Doron; Benjamin, Hila; Iremadze, Nika; Soifer, Ilya; Krieger, Gat; Eacker, Stephen; Wood, Mary; Cross, Erin; Husar, Greg; Gross, Stephen; Vernich, Michael; Kolmogorov, Mikhail; Ahmad, Tanveer; Keskus, Ayse G; Bryant, Asher; Thibaud-Nissen, Francoise; Trow, Jonathan; Proszynski, Jacqueline; Hirschberg, Jeremy Wain; Ryon, Krista; Mason, Christopher E; Bhakta, Mital S; Sanborn, J Zachary; Munding, Elizabeth M; Wagner, Justin; Xiao, Chunlin; Liss, Andrew S; Zook, Justin M

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

开发并广泛测序经广泛认可的“瓶中基因组”匹配的肿瘤-正常组织对

Jennifer H McDaniel ,Vaidehi Patel ,Nathan D Olson ,Hua-Jun He ,Zhiyong He ,Kenneth D Cole ,Alexander A Gooden ,Anthony Schmitt ,Kristin Sikkink ,Fritz J Sedlazeck ,Harsha Doddapaneni ,Shalini N Jhangiani ,Donna M Muzny ,Marie-Claude Gingras ,Heer Mehta ,Sairam Behera ,Luis F Paulin ,Alex R Hastie ,Hung-Chun Yu ,Victor Weigman ,Alison Rojas ,Katie Kennedy ,Jamie Remington ,Isai Salas-González ,Mitch Sudkamp ,Kelly Wiseman ,Bryan R Lajoie ,Shawn Levy ,Miten Jain ,Stuart Akeson ,Giuseppe Narzisi ,Zoe Steinsnyder ,Catherine Reeves ,Jennifer Shelton ,Sarah B Kingan ,Christine Lambert ,Primo Baybayan ,Aaron M Wenger ,Ian J McLaughlin ,Aaron Adamson ,Christopher Kingsley ,Melanie Wescott ,Young Kim ,Benedict Paten ,Jimin Park ,Ivo Violich ,Karen H Miga ,Joshua Gardner ,Brandy McNulty ,Gail L Rosen ,Rajiv McCoy ,Francesco Brundu ,Erfan Sayyari ,Konrad Scheffler ,Sean Truong ,Severine Catreux ,Lesley Chapman Hannah ,Doron Lipson ,Hila Benjamin ,Nika Iremadze ,Ilya Soifer ,Gat Krieger ,Stephen Eacker ,Mary Wood ,Erin Cross ,Greg Husar ,Stephen Gross ,Michael Vernich ,Mikhail Kolmogorov ,Tanveer Ahmad ,Ayse G Keskus ,Asher Bryant ,Francoise Thibaud-Nissen ,Jonathan Trow ,Jacqueline Proszynski ,Jeremy Wain Hirschberg ,Krista Ryon ,Christopher E Mason ,Mital S Bhakta ,J Zachary Sanborn ,Elizabeth M Munding ,Justin Wagner ,Chunlin Xiao # ,Andrew S Liss # ,Justin M Zook #

Unraveling the hidden complexity of cancer through long-read sequencing

利用长读长测序揭示癌症的隐藏复杂性

Li, Qiuhui; Keskus, Ayse G; Wagner, Justin; Izydorczyk, Michal B; Timp, Winston; Sedlazeck, Fritz J; Klein, Alison P; Zook, Justin M; Kolmogorov, Mikhail; Schatz, Michael C

Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencing

利用长读测序深入了解宫颈癌断裂-融合-桥接循环的机制和结构

Isabel Rodriguez, Nicole M Rossi, Ayse G Keskus, Yi Xie, Tanveer Ahmad, Asher Bryant, Hong Lou, Jesica Godinez Paredes, Rose Milano, Nina Rao, Sonam Tulsyan, Joseph F Boland, Wen Luo, Jia Liu, Tim O'Hanlon, Jazmyn Bess, Vera Mukhina, Daria Gaykalova, Yuko Yuki, Laksh Malik, Kimberley J Billingsley, 

Successful classification of clinical pediatric leukemia genetic subtypes via structural variant detection using HiFi long-read sequencing

利用高保真长读长测序技术进行结构变异检测,成功实现临床儿童白血病基因亚型的分类

Lansdon, Lisa A; Yoo, Byunggil; Keskus, Ayse; Pushel, Irina; Bi, Chengpeng; Ahmad, Tanveer; Bryant, Asher; Walter, Adam; Gibson, Margaret; Rindler, Mary; Li, Weijie; Habeebu, Sultan M; Cooley, Linda D; Herriges, John; Repnikova, Elena; Zhang, Lei; August, Keith J; Flatt, Terrie G; Gamis, Alan S; Guest, Erin M; Hays, J Allyson; Hetherington, Maxine; Lewing, Karen; Pastinen, Tomi; Kolmogorov, Mikhail; Farooqi, Midhat S

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads.

Severus:利用长读长技术准确检测和表征肿瘤基因组中的体细胞结构变异。

Keskus Ayse, Bryant Asher, Ahmad Tanveer, Yoo Byunggil, Aganezov Sergey, Goretsky Anton, Donmez Ataberk, Lansdon Lisa A, Rodriguez Isabel, Park Jimin, Liu Yuelin, Cui Xiwen, Gardner Joshua, McNulty Brandy, Sacco Samuel, Shetty Jyoti, Zhao Yongmei, Tran Bao, Narzisi Giuseppe, Helland Adrienne, Cook Daniel E, Chang Pi-Chuan, Kolesnikov Alexey, Carroll Andrew, Molloy Erin K, Pushel Irina, Guest Erin, Pastinen Tomi, Shafin Kishwar, Miga Karen H, Malikic Salem, Day Chi-Ping, Robine Nicolas, Sahinalp Cenk, Dean Michael, Farooqi Midhat S, Paten Benedict, Kolmogorov Mikhail

DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies.

DeepSomatic:适用于多种测序技术的精确体细胞小变异发现。

Park Jimin, Cook Daniel E, Chang Pi-Chuan, Kolesnikov Alexey, Brambrink Lucas, Mier Juan Carlos, Gardner Joshua, McNulty Brandy, Sacco Samuel, Keskus Ayse, Bryant Asher, Ahmad Tanveer, Shetty Jyoti, Zhao Yongmei, Tran Bao, Narzisi Giuseppe, Helland Adrienne, Yoo Byunggil, Pushel Irina, Lansdon Lisa A, Bi Chengpeng, Walter Adam, Gibson Margaret, Pastinen Tomi, Farooqi Midhat S, Robine Nicolas, Miga Karen H, Carroll Andrew, Kolmogorov Mikhail, Paten Benedict, Shafin Kishwar

Long-Term Acetylcholinesterase Depletion Alters the Levels of Key Synaptic Proteins while Maintaining Neuronal Markers in the Aging Zebrafish (Danio rerio) Brain

长期乙酰胆碱酯酶耗竭会改变关键突触蛋白的水平,同时维持衰老斑马鱼 (Danio rerio) 大脑中的神经元标记物

Elif Tugce Karoglu-Eravsar, Melek Umay Tuz-Sasik, Aysenur Karaduman, Ayse Gokce Keskus, Ayca Arslan-Ergul, Ozlen Konu, Hulusi Kafaligonul, Michelle M Adams

Insights into the Mechanisms and Structure of Breakage-Fusion-Bridge Cycles in Cervical Cancer using Long-Read Sequencing

利用长读测序深入了解宫颈癌断裂-融合-桥接循环的机制和结构

Isabel Rodriguez, Nicole M Rossi, Ayse Keskus, Yi Xie, Tanveer Ahmad, Asher Bryant, Hong Lou, Jesica Godinez Paredes, Rose Milano, Nina Rao, Sonam Tulsyan, Joseph F Boland, Wen Luo, Jia Liu, Tim O'Hanlon, Jazmyn Bess, Vera Mukhina, Daria Gaykalova, Yuko Yuki, Laksh Malik, Kimberley Billingsley, Corn