日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues.

小鼠胚胎组织中三维基因组和表观基因组的整合分析

Yu Miao, Zemke Nathan R, Chen Ziyin, Juric Ivan, Hu Rong, Raviram Ramya, Abnousi Armen, Fang Rongxin, Zhang Yanxiao, Gorkin David U, Li Yang E, Zhao Yuan, Lee Lindsay, Mishra Shreya, Schmitt Anthony D, Qiu Yunjiang, Dickel Diane E, Visel Axel, Pennacchio Len A, Hu Ming, Ren Bing

Removing unwanted variation between samples in Hi-C experiments

消除Hi-C实验中样本间不必要的变异

Fletez-Brant, Kipper; Qiu, Yunjiang; Gorkin, David U; Hu, Ming; Hansen, Kasper D

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

EN-TEx资源库包含多组织个体表观基因组和变异影响模型

Rozowsky, Joel; Gao, Jiahao; Borsari, Beatrice; Yang, Yucheng T; Galeev, Timur; Gürsoy, Gamze; Epstein, Charles B; Xiong, Kun; Xu, Jinrui; Li, Tianxiao; Liu, Jason; Yu, Keyang; Berthel, Ana; Chen, Zhanlin; Navarro, Fabio; Sun, Maxwell S; Wright, James; Chang, Justin; Cameron, Christopher J F; Shoresh, Noam; Gaskell, Elizabeth; Drenkow, Jorg; Adrian, Jessika; Aganezov, Sergey; Aguet, François; Balderrama-Gutierrez, Gabriela; Banskota, Samridhi; Corona, Guillermo Barreto; Chee, Sora; Chhetri, Surya B; Cortez Martins, Gabriel Conte; Danyko, Cassidy; Davis, Carrie A; Farid, Daniel; Farrell, Nina P; Gabdank, Idan; Gofin, Yoel; Gorkin, David U; Gu, Mengting; Hecht, Vivian; Hitz, Benjamin C; Issner, Robbyn; Jiang, Yunzhe; Kirsche, Melanie; Kong, Xiangmeng; Lam, Bonita R; Li, Shantao; Li, Bian; Li, Xiqi; Lin, Khine Zin; Luo, Ruibang; Mackiewicz, Mark; Meng, Ran; Moore, Jill E; Mudge, Jonathan; Nelson, Nicholas; Nusbaum, Chad; Popov, Ioann; Pratt, Henry E; Qiu, Yunjiang; Ramakrishnan, Srividya; Raymond, Joe; Salichos, Leonidas; Scavelli, Alexandra; Schreiber, Jacob M; Sedlazeck, Fritz J; See, Lei Hoon; Sherman, Rachel M; Shi, Xu; Shi, Minyi; Sloan, Cricket Alicia; Strattan, J Seth; Tan, Zhen; Tanaka, Forrest Y; Vlasova, Anna; Wang, Jun; Werner, Jonathan; Williams, Brian; Xu, Min; Yan, Chengfei; Yu, Lu; Zaleski, Christopher; Zhang, Jing; Ardlie, Kristin; Cherry, J Michael; Mendenhall, Eric M; Noble, William S; Weng, Zhiping; Levine, Morgan E; Dobin, Alexander; Wold, Barbara; Mortazavi, Ali; Ren, Bing; Gillis, Jesse; Myers, Richard M; Snyder, Michael P; Choudhary, Jyoti; Milosavljevic, Aleksandar; Schatz, Michael C; Bernstein, Bradley E; Guigó, Roderic; Gingeras, Thomas R; Gerstein, Mark

REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats

REViewer:基于单倍型解析的串联重复序列及其周围序列比对可视化

Dolzhenko, Egor; Weisburd, Ben; Ibañez, Kristina; Rajan-Babu, Indhu-Shree; Anyansi, Christine; Bennett, Mark F; Billingsley, Kimberley; Carroll, Ashley; Clamons, Samuel; Danzi, Matt C; Deshpande, Viraj; Ding, Jinhui; Fazal, Sarah; Halman, Andreas; Jadhav, Bharati; Qiu, Yunjiang; Richmond, Phillip A; Saunders, Christopher T; Scheffler, Konrad; van Vugt, Joke J F A; Zwamborn, Ramona R A J; Chong, Samuel S; Friedman, Jan M; Tucci, Arianna; Rehm, Heidi L; Eberle, Michael A

An atlas of gene regulatory elements in adult mouse cerebrum.

成年小鼠大脑基因调控元件图谱

Li Yang Eric, Preissl Sebastian, Hou Xiaomeng, Zhang Ziyang, Zhang Kai, Qiu Yunjiang, Poirion Olivier B, Li Bin, Chiou Joshua, Liu Hanqing, Pinto-Duarte Antonio, Kubo Naoki, Yang Xiaoyu, Fang Rongxin, Wang Xinxin, Han Jee Yun, Lucero Jacinta, Yan Yiming, Miller Michael, Kuan Samantha, Gorkin David, Gaulton Kyle J, Shen Yin, Nunn Michael, Mukamel Eran A, Behrens M Margarita, Ecker Joseph R, Ren Bing

A single-cell atlas of chromatin accessibility in the human genome.

人类基因组染色质可及性的单细胞图谱

Zhang Kai, Hocker James D, Miller Michael, Hou Xiaomeng, Chiou Joshua, Poirion Olivier B, Qiu Yunjiang, Li Yang E, Gaulton Kyle J, Wang Allen, Preissl Sebastian, Ren Bing

FIREcaller: Detecting frequently interacting regions from Hi-C data

FIREcaller:从 Hi-C 数据中检测频繁交互区域

Crowley, Cheynna; Yang, Yuchen; Qiu, Yunjiang; Hu, Benxia; Abnousi, Armen; Lipiński, Jakub; Plewczyński, Dariusz; Wu, Di; Won, Hyejung; Ren, Bing; Hu, Ming; Li, Yun

An atlas of dynamic chromatin landscapes in mouse fetal development

小鼠胎儿发育过程中动态染色质图谱

Gorkin, David U; Barozzi, Iros; Zhao, Yuan; Zhang, Yanxiao; Huang, Hui; Lee, Ah Young; Li, Bin; Chiou, Joshua; Wildberg, Andre; Ding, Bo; Zhang, Bo; Wang, Mengchi; Strattan, J Seth; Davidson, Jean M; Qiu, Yunjiang; Afzal, Veena; Akiyama, Jennifer A; Plajzer-Frick, Ingrid; Novak, Catherine S; Kato, Momoe; Garvin, Tyler H; Pham, Quan T; Harrington, Anne N; Mannion, Brandon J; Lee, Elizabeth A; Fukuda-Yuzawa, Yoko; He, Yupeng; Preissl, Sebastian; Chee, Sora; Han, Jee Yun; Williams, Brian A; Trout, Diane; Amrhein, Henry; Yang, Hongbo; Cherry, J Michael; Wang, Wei; Gaulton, Kyle; Ecker, Joseph R; Shen, Yin; Dickel, Diane E; Visel, Axel; Pennacchio, Len A; Ren, Bing

Multi-platform discovery of haplotype-resolved structural variation in human genomes

利用多平台发现人类基因组中单倍型解析的结构变异

Chaisson, Mark J P; Sanders, Ashley D; Zhao, Xuefang; Malhotra, Ankit; Porubsky, David; Rausch, Tobias; Gardner, Eugene J; Rodriguez, Oscar L; Guo, Li; Collins, Ryan L; Fan, Xian; Wen, Jia; Handsaker, Robert E; Fairley, Susan; Kronenberg, Zev N; Kong, Xiangmeng; Hormozdiari, Fereydoun; Lee, Dillon; Wenger, Aaron M; Hastie, Alex R; Antaki, Danny; Anantharaman, Thomas; Audano, Peter A; Brand, Harrison; Cantsilieris, Stuart; Cao, Han; Cerveira, Eliza; Chen, Chong; Chen, Xintong; Chin, Chen-Shan; Chong, Zechen; Chuang, Nelson T; Lambert, Christine C; Church, Deanna M; Clarke, Laura; Farrell, Andrew; Flores, Joey; Galeev, Timur; Gorkin, David U; Gujral, Madhusudan; Guryev, Victor; Heaton, William Haynes; Korlach, Jonas; Kumar, Sushant; Kwon, Jee Young; Lam, Ernest T; Lee, Jong Eun; Lee, Joyce; Lee, Wan-Ping; Lee, Sau Peng; Li, Shantao; Marks, Patrick; Viaud-Martinez, Karine; Meiers, Sascha; Munson, Katherine M; Navarro, Fabio C P; Nelson, Bradley J; Nodzak, Conor; Noor, Amina; Kyriazopoulou-Panagiotopoulou, Sofia; Pang, Andy W C; Qiu, Yunjiang; Rosanio, Gabriel; Ryan, Mallory; Stütz, Adrian; Spierings, Diana C J; Ward, Alistair; Welch, AnneMarie E; Xiao, Ming; Xu, Wei; Zhang, Chengsheng; Zhu, Qihui; Zheng-Bradley, Xiangqun; Lowy, Ernesto; Yakneen, Sergei; McCarroll, Steven; Jun, Goo; Ding, Li; Koh, Chong Lek; Ren, Bing; Flicek, Paul; Chen, Ken; Gerstein, Mark B; Kwok, Pui-Yan; Lansdorp, Peter M; Marth, Gabor T; Sebat, Jonathan; Shi, Xinghua; Bashir, Ali; Ye, Kai; Devine, Scott E; Talkowski, Michael E; Mills, Ryan E; Marschall, Tobias; Korbel, Jan O; Eichler, Evan E; Lee, Charles

The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell

Hippo信号通路效应蛋白YAP和TAZ在细胞中既具有独特功能,又存在功能重叠。

Plouffe, Steven W; Lin, Kimberly C; Moore, Jerrell L 3rd; Tan, Frederick E; Ma, Shenghong; Ye, Zhen; Qiu, Yunjiang; Ren, Bing; Guan, Kun-Liang