日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

利用紧凑特征集将非TCGA癌症样本分类到TCGA分子亚型

Ellrott, Kyle; Wong, Christopher K; Yau, Christina; Castro, Mauro A A; Lee, Jordan A; Karlberg, Brian J; Grewal, Jasleen K; Lagani, Vincenzo; Tercan, Bahar; Friedl, Verena; Hinoue, Toshinori; Uzunangelov, Vladislav; Westlake, Lindsay; Loinaz, Xavier; Felau, Ina; Wang, Peggy I; Kemal, Anab; Caesar-Johnson, Samantha J; Shmulevich, Ilya; Lazar, Alexander J; Tsamardinos, Ioannis; Hoadley, Katherine A; Robertson, A Gordon; Knijnenburg, Theo A; Benz, Christopher C; Stuart, Joshua M; Zenklusen, Jean C; Cherniack, Andrew D; Laird, Peter W

Transcriptional profiling clarifies a program of enzalutamide extreme non-response in lethal prostate cancer.

转录组分析揭示了致命性前列腺癌中恩扎卢胺极度无反应的机制

Kumaraswamy Anbarasu, Hu Ya-Mei, Yates Joel A, Zhang Chao, Rodansky Eva, Khokhani Dhruv, Flores Diana, Duan Zhi, Zhang Yi, Tabatabaei Shaadi, Slottke Rachel, Ye Shangyuan, Lara Primo, Foye Adam, Ryan Charles J, Quigley David A, Huang Jiaoti, Aggarwal Rahul, Reiter Robert E, Wicha Max S, Beer Tomasz M, Rettig Matthew, Gleave Martin, Evans Christopher P, Witte Owen N, Stuart Joshua M, Thomas George V, Feng Felix Y, Small Eric J, Xia Zheng, Alumkal Joshi J

Transformer-based modeling of Clonal Selection and Expression Dynamics reveals resistance mechanisms in breast cancer.

基于Transformer的克隆选择和表达动力学建模揭示了乳腺癌的耐药机制

Maulding Nathan D, Zou Jun, Zhou Wei, Metcalfe Ciara, Stuart Joshua M, Ye Xin, Hafner Marc

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

用于评估机器学习方法分类器特征集在路径空间中距离的协议

Tercan, Bahar; Apolonio, Victor H; Chagas, Vinicius S; Wong, Christopher K; Lee, Jordan A; Yau, Christina; Benz, Christopher C; Stuart, Joshua M; Karlberg, Brian J; Ellrott, Kyle; Grewal, Jasleen K; Jones, Steven J M; Zenklusen, Jean C; Robertson, A Gordon; Laird, Peter W; Cherniack, Andrew D; Castro, Mauro A A

Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers

单细胞染色质可及性揭示原发性人类癌症中的恶性调控程序

Sundaram, Laksshman; Kumar, Arvind; Zatzman, Matthew; Salcedo, Adriana; Ravindra, Neal; Shams, Shadi; Louie, Bryan H; Bagdatli, S Tansu; Myers, Matthew A; Sarmashghi, Shahab; Choi, Hyo Young; Choi, Won-Young; Yost, Kathryn E; Zhao, Yanding; Granja, Jeffrey M; Hinoue, Toshinori; Hayes, D Neil; Cherniack, Andrew; Felau, Ina; Choudhry, Hani; Zenklusen, Jean C; Farh, Kyle Kai-How; McPherson, Andrew; Curtis, Christina; Laird, Peter W; Demchok, John A; Yang, Liming; Tarnuzzer, Roy; Caesar-Johnson, Samantha J; Wang, Zhining; Doane, Ashley S; Khurana, Ekta; Castro, Mauro A A; Lazar, Alexander J; Broom, Bradley M; Weinstein, John N; Akbani, Rehan; Kumar, Shwetha V; Raphael, Benjamin J; Wong, Christopher K; Stuart, Joshua M; Safavi, Rojin; Benz, Christopher C; Johnson, Benjamin K; Kyi, Cindy; Shen, Hui; Corces, M Ryan; Chang, Howard Y; Greenleaf, William J

Associating transcription factors to single-cell trajectories with DREAMIT

利用DREAMIT将转录因子与单细胞轨迹关联起来

Maulding, Nathan D; Seninge, Lucas; Stuart, Joshua M

Single-cell signatures identify microenvironment factors in tumors associated with patient outcomes

单细胞特征可识别肿瘤微环境因素,这些因素与患者预后相关。

Xue, Yuanqing; Friedl, Verena; Ding, Hongxu; Wong, Christopher K; Stuart, Joshua M

The manatee variational autoencoder model for predicting gene expression alterations caused by transcription factor perturbations

海牛变分自编码器模型用于预测转录因子扰动引起的基因表达改变

Yang, Ying; Seninge, Lucas; Wang, Ziyuan; Oro, Anthony; Stuart, Joshua M; Ding, Hongxu

Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

作者更正:对 2,658 个癌症全基因组中非编码体细胞驱动基因的分析

Rheinbay, Esther; Nielsen, Morten Muhlig; Abascal, Federico; Wala, Jeremiah A; Shapira, Ofer; Tiao, Grace; Hornshøj, Henrik; Hess, Julian M; Juul, Randi Istrup; Lin, Ziao; Feuerbach, Lars; Sabarinathan, Radhakrishnan; Madsen, Tobias; Kim, Jaegil; Mularoni, Loris; Shuai, Shimin; Lanzós, Andrés; Herrmann, Carl; Maruvka, Yosef E; Shen, Ciyue; Amin, Samirkumar B; Bandopadhayay, Pratiti; Bertl, Johanna; Boroevich, Keith A; Busanovich, John; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Craft, David; Dhingra, Priyanka; Diamanti, Klev; Fonseca, Nuno A; Gonzalez-Perez, Abel; Guo, Qianyun; Hamilton, Mark P; Haradhvala, Nicholas J; Hong, Chen; Isaev, Keren; Johnson, Todd A; Juul, Malene; Kahles, Andre; Kahraman, Abdullah; Kim, Youngwook; Komorowski, Jan; Kumar, Kiran; Kumar, Sushant; Lee, Donghoon; Lehmann, Kjong-Van; Li, Yilong; Liu, Eric Minwei; Lochovsky, Lucas; Park, Keunchil; Pich, Oriol; Roberts, Nicola D; Saksena, Gordon; Schumacher, Steven E; Sidiropoulos, Nikos; Sieverling, Lina; Sinnott-Armstrong, Nasa; Stewart, Chip; Tamborero, David; Tubio, Jose M C; Umer, Husen M; Uusküla-Reimand, Liis; Wadelius, Claes; Wadi, Lina; Yao, Xiaotong; Zhang, Cheng-Zhong; Zhang, Jing; Haber, James E; Hobolth, Asger; Imielinski, Marcin; Kellis, Manolis; Lawrence, Michael S; von Mering, Christian; Nakagawa, Hidewaki; Raphael, Benjamin J; Rubin, Mark A; Sander, Chris; Stein, Lincoln D; Stuart, Joshua M; Tsunoda, Tatsuhiko; Wheeler, David A; Johnson, Rory; Reimand, Jüri; Gerstein, Mark; Khurana, Ekta; Campbell, Peter J; López-Bigas, Núria; Weischenfeldt, Joachim; Beroukhim, Rameen; Martincorena, Iñigo; Pedersen, Jakob Skou; Getz, Gad

Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes

作者更正:对超过2500个完整癌症基因组进行通路和网络分析

Reyna, Matthew A; Haan, David; Paczkowska, Marta; Verbeke, Lieven P C; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S; Pedersen, Jakob Skou; Rubin, Mark A; Wheeler, David A; Brunak, Søren; Izarzugaza, Jose M G; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S Cenk; Valencia, Alfonso; Reimand, Jüri; Stuart, Joshua M; Raphael, Benjamin J