TaqMan quantitative real-time PCR for detecting Avipoxvirus DNA in various sample types from hummingbirds

TaqMan 定量实时 PCR 用于检测蜂鸟各种样本中的禽痘病毒 DNA

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作者:Hanna E Baek, Ruta R Bandivadekar, Pranav Pandit, Michelle Mah, Ravinder N M Sehgal, Lisa A Tell

Background

Avian pox is a viral disease documented in a wide range of bird species. Disease-related detrimental effects can cause dyspnea and dysphagia, and birds with high metabolic requirements, such as hummingbirds, are thus especially vulnerable to the pathogen. Hummingbirds have a strong presence in California, especially in urban environments. However, little is understood regarding the impact of pox virus on hummingbird populations. Currently, diagnosing a pox infection relies on obtaining a tissue biopsy, which poses significant risks to birds and challenges in the field. Understanding the ecology of hummingbird pox viral infections could be advanced by a minimally invasive ante-mortem diagnostic method. Our

Significance

Hummingbird avian pox can be diagnosed without relying on tissue biopsies. We identify that feather samples, of which contour feathers yielded the best results, can be used for diagnosing infected birds, thus reducing sampling risk. In sum, the real-time PCR assay detected viral DNA in various integumentary system sample types and will be useful in future studies of hummingbird disease ecology.

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