日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

In vivo mapping of mutagenesis sensitivity of human enhancers

人类增强子诱变敏感性的体内定位

Kosicki, Michael; Zhang, Boyang; Hecht, Vivian; Pampari, Anusri; Cook, Laura E; Slaven, Neil; Akiyama, Jennifer A; Plajzer-Frick, Ingrid; Novak, Catherine S; Kato, Momoe; Tran, Stella; Hunter, Riana D; von Maydell, Kianna; Barton, Sarah; Beckman, Erik; Zhu, Yiwen; Dickel, Diane E; Kundaje, Anshul; Visel, Axel; Pennacchio, Len A

Rewriting regulatory DNA to dissect and reprogram gene expression

重写调控DNA以解析和重编程基因表达

Martyn, Gabriella E; Montgomery, Michael T; Jones, Hank; Guo, Katherine; Doughty, Benjamin R; Linder, Johannes; Bisht, Deepa; Xia, Fan; Cai, Xiangmeng S; Chen, Ziwei; Cochran, Kelly; Lawrence, Kathryn A; Munson, Glen; Pampari, Anusri; Fulco, Charles P; Sahni, Nidhi; Kelley, David R; Lander, Eric S; Kundaje, Anshul; Engreitz, Jesse M

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage.

迁移学习揭示了转录因子剂量定量反应的序列决定因素

Naqvi Sahin, Kim Seungsoo, Tabatabaee Saman, Pampari Anusri, Kundaje Anshul, Pritchard Jonathan K, Wysocka Joanna

ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants

ChromBPNet:基于偏差分解的、碱基分辨率的染色质可及性深度学习模型揭示顺式调控序列语法、转录因子足迹和调控变异

Pampari, Anusri; Shcherbina, Anna; Kvon, Evgeny Z; Kosicki, Michael; Nair, Surag; Kundu, Soumya; Kathiria, Arwa S; Risca, Viviana I; Kuningas, Kristiina; Alasoo, Kaur; Greenleaf, William James; Pennacchio, Len A; Kundaje, Anshul

Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements

利用综合图谱和预测模型揭示大脑活性调控元件的复杂性和演化过程

Pratt, Henry E; Andrews, Gregory; Shedd, Nicole; Phalke, Nishigandha; Li, Tongxin; Pampari, Anusri; Jensen, Matthew; Wen, Cindy; Consortium, PsychENCODE; Gandal, Michael J; Geschwind, Daniel H; Gerstein, Mark; Moore, Jill; Kundaje, Anshul; Colubri, Andrés; Weng, Zhiping

Flexible use of conserved motif vocabularies constrains genome access in cell type evolution

灵活使用保守基序词汇限制了细胞类型进化中的基因组访问

Chew Chai, Jesse Gibson, Pengyang Li, Anusri Pampari, Aman Patel, Anshul Kundaje, Bo Wang

An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation

用于研究转录调控的候选顺式调控元件扩展注册库

Moore, Jill E; Pratt, Henry E; Fan, Kaili; Phalke, Nishigandha; Fisher, Jonathan; Elhajjajy, Shaimae I; Andrews, Gregory; Gao, Mingshi; Shedd, Nicole; Fu, Yu; Lacadie, Matthew C; Meza, Jair; Ganna, Mohit; Choudhury, Eva; Swofford, Ross; Farrell, Nina P; Pampari, Anusri; Ramalingam, Vivekanandan; Reese, Fairlie; Borsari, Beatrice; Yu, Michelle; Wattenberg, Eve; Ruiz-Romero, Marina; Razavi-Mohseni, Milad; Xu, Jinrui; Galeev, Timur; Beer, Michael A; Guigó, Roderic; Gerstein, Mark; Engreitz, Jesse; Ljungman, Mats; Reddy, Timothy E; Snyder, Michael P; Epstein, Charles B; Gaskell, Elizabeth; Bernstein, Bradley E; Dickel, Diane E; Visel, Axel; Pennacchio, Len A; Mortazavi, Ali; Kundaje, Anshul; Weng, Zhiping

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage

迁移学习揭示了转录因子剂量定量反应的序列决定因素

Sahin Naqvi, Seungsoo Kim, Saman Tabatabaee, Anusri Pampari, Anshul Kundaje, Jonathan K Pritchard, Joanna Wysocka

Mutagenesis Sensitivity Mapping of Human Enhancers In Vivo

人类增强子体内诱变敏感性作图

Kosicki, Michael; Zhang, Boyang; Pampari, Anusri; Akiyama, Jennifer A; Plajzer-Frick, Ingrid; Novak, Catherine S; Tran, Stella; Zhu, Yiwen; Kato, Momoe; Hunter, Riana D; von Maydell, Kianna; Barton, Sarah; Beckman, Erik; Kundaje, Anshul; Dickel, Diane E; Visel, Axel; Pennacchio, Len A

Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation

果蝇胚胎中染色质的可及性由转录因子先锋和增强子激活决定

Kaelan J Brennan, Melanie Weilert, Sabrina Krueger, Anusri Pampari, Hsiao-Yun Liu, Ally W H Yang, Jason A Morrison, Timothy R Hughes, Christine A Rushlow, Anshul Kundaje, Julia Zeitlinger